Hi Arron,
I'm sorry that didn't work. I normally run using a dozen different methods
depending upon my needs. No real silver bullet ...
The easiest way to run the fast clinical pipeline from a command line, is:
1. Check out trunk
2. Build with mvn package
you may need to specify -Dsk
Hi Shahid,
The error is that java cannot find the class:
org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
I’m not sure why you are seeing that as the class does exist in trunk as it is
spelled out. I cannot repeat your error. Are you able to check your
repository or .jar to see
FWIW, the method that we use for doing large batches is to create a
pipeline descriptor using uimafit, create a reader such as
FilesInDirectoryCollectionReader or UriCollectionReader, and then use a
JCasIterable to wrap a for-loop around every document. This lets you
collect statistics or data stru
Ah – there might be an erroneous space in the classname.
Go to your dictionary settings xml. In the line:
org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory
Look for a space between “JdbcConceptFactory” and “”
If you see a space, remove it.
It looks like I introduced this bug
