creating document indexes based on personal id terms

2015-12-09 Thread Arron Lacey
Hi- I have clinic letters where I would like to pick out SNOMED codes. I would also like for each letter to be able to pick out unique identifiers such as name, hospital ID, clinic data etc and keep a link between the SNOMED output and these identifiers. It may also be the case that I would ha

Re: ctakes blog

2015-12-09 Thread Miller, Timothy
Sounds like there is enough interest. I will request a blog and take responsibility for a few posts along with occasionally asking for others to create content (like Andy and David who volunteered :) ). Tim From: Finan, Sean Sent: Tuesday, December 8, 20

RE: ctakes blog

2015-12-09 Thread Savova, Guergana
Excellent idea! +1 --guergana -Original Message- From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu] Sent: Tuesday, December 8, 2015 4:41 PM To: dev@ctakes.apache.org Subject: ctakes blog The recent discussion over dictionary building, and someone pointing out it has com

RE: ctakes blog

2015-12-09 Thread John Travis Green
I think there is a lot of opportunity here to document things (e.g. Tutorials like how to setup an annotator; I created a video for example that still needs posted somewhere to this effect) that may not have a formal place on the website but need explaining. Example: given the number of ancillar

Re: ctakes with icd10; 2015 versions available on sourceforge!

2015-12-09 Thread Alaa al Barari
Thanks Finan and Brandon, your help is appreciated a lot. I downloaded the dictionary tool from https://svn.apache.org/repos/asf/ctakes/sandbox/dictionarytool/bin/dictionarytool.zip I hope its the latest and bug free. my running command is : java -cp ./dictionarytool.jar:lib/* org.apache.ctakes.

Re: ctakes with icd10; 2015 versions available on sourceforge!

2015-12-09 Thread Alaa al Barari
so basically looks like the path had Desktop as capital thats why it did not work. I ended up having rows like this inside ctakesicd2015.scripts : INSERT INTO CUI_TERMS VALUES(2723481,8,15,'magnesium sulfate 1000 mg / 50 ml - nacl 0 . 9 % intravenous solution','nacl') INSERT INTO CUI_TERMS VALUES

RE: ctakes with icd10; 2015 versions available on sourceforge!

2015-12-09 Thread Finan, Sean
Hi Alaa, If you downloaded the 2015 .property and .script files then you do not need to run the dictionary creation tool. Those databases are already populated and ready to use. Sean -Original Message- From: Alaa al Barari [mailto:alaa.albar...@gmail.com] Sent: Wednesday, December 0

RE: ctakes with icd10; 2015 versions available on sourceforge!

2015-12-09 Thread Alaa al Barari
Thank, but what I endup with is wrong ? On Dec 10, 2015 4:26 AM, "Finan, Sean" wrote: > Hi Alaa, > > If you downloaded the 2015 .property and .script files then you do not > need to run the dictionary creation tool. Those databases are already > populated and ready to use. > > Sean > > > -Or