Email address update

2015-11-12 Thread Pei Chen
Hi, Just wanted to give a heads up- My usual childrens/harvard email address will no longer be valid after this week. I will continue to use my chenpei@a.o one as I will be moving on to focus on our startup, Wired Informatics. --Pei

Re: cTAKES corpus

2015-11-12 Thread Pei Chen
Hi Jose, There were some previous discussions[1] on how to get the annotated training data. Essentially, there currently isn't a centralized or easy way of getting w/o having to sign individual Data Use Agreements from source institutions. There is a clear need to simplify this and I believe the

cTAKES dictionary lookup behavior question

2015-11-12 Thread Tomasz Oliwa
Hi, cTAKES has a dictionary lookup behavior that I cannot explain, you can verify the queries via the cTAKES demo that has been posted here at: http://52.27.22.206:8080/index.jsp but it also happens with the current 3.2.2 version and the fast dictionary UMLS lookup SENTENCE: Took the baby to

Re: cTAKES dictionary lookup behavior question

2015-11-12 Thread britt fitch
The rare words, given the example terms below are “primary”, “milk”, and “baby”. The lookup allows for a certain number of “misses”. The “baby to” hits on “baby” as the rare word. “baby to” compared to “baby tooth” is 1 “miss” and qualifies as a match. (in practice, if I recall correctly, “to” is

org.apache.ctakes.typesystem.type.structured.DocumentID

2015-11-12 Thread Yi-Wen Liu
Hello, I am new to cTAKES, and when I was running it, I got the following error: 10 Nov 2015 22:30:49,850 INFO JobDriver - T[21] advanceJdState current=Initializing request=Active result=Active 10 Nov 2015 22:30:49,982 ERROR ProxyLogger - T[18] loggify org.apache.uima.cas.CASRuntimeException:

RE: cTAKES dictionary lookup behavior question

2015-11-12 Thread Tomasz Oliwa
Britt, I observed it also depends on what the "missed" word is. "baby to" , "baby too" match C1305907 of "baby tooth", however "baby token" does not match it. "electrolyte le", "electrolyte lev" match C0428284 "electrolyte level", but "electrolyte dev" does not match. It seems if the "missed"