This is largely directed to Sean but open to other feedback as well.
The current fast lookup using a BSV parses the first field as “C” and up to 7
numerals, padding with “0" as needed to reach that length when applicable [see
CuiCodeUtil.getCuiCode(String)]
The CUI string is then substring’d fr
Hi Britt,
This did come up briefly wrt NCI custom cuis, but there was no urgency so it
got shoved onto a back burner. I’m glad that you brought it up again as it is
something that I’ve been wanting to enhance.
My thought at the moment is to change CuiCodeUtil (…lookup2.util.) from a
non-insta
By the way, in case you are wondering why it does this … the umls database that
we use has roughly half a million cuis. Storing cuis in the various tables as
longs takes up a lot less space than storing them as 8 character strings.
From: britt fitch [mailto:britt.fi...@wiredinformatics.com]
Sen
Thanks for the details Sean. I had assumed the conversion to Long was related
to sort/search efficiency but that makes sense.
I had been thinking of something similar with parsing out the non-numerals and
converting them to 2-digit numeral values. i.e. “a” = 01, “z” = 26. Ultimately
CN123456 wo
ctakes 3.2.2
Trying to check my ctakes install. When I run runctakesCVD and try to load
AE I get the following error:
08 Jul 2015 16:09:10 ERROR UmlsUserApprover - UMLS Account at
https://uts-ws.n
lm.nih.gov/restful/isValidUMLSUser is not valid for user docdailey,
ctakes.umlsp
w=redacted w
Hi,
Is ",
ctakes.umlsp
w=redacted with CHANGEME "
something that you wrote to hide your password on this email? If so, that is
fine, it is just a little odd. If not, then can you double-check how your
password is set when you run?
-Original Message-
From: William Dailey [mailto:wdai
redacted means i edited out my password... set with:
set ctakes.umlsuser=docdailey, ctakes.umlspw=
set CURRENT_DIR=%cd%
replaces my password
"with CHANGEME" is part of the actual error
-Original Message-
From: "Finan, Sean"
To: "dev@ctakes.apache.org"
Date: Wed, 8 Jul 2015 21:40:
Try getting rid of the comma
-Original Message-
From: William Dailey [mailto:wdai...@gvmh.org]
Sent: Wednesday, July 08, 2015 5:52 PM
To: dev@ctakes.apache.org
Subject: RE: Authentication failure - crossposted
redacted means i edited out my password... set with:
set ctakes.umlsuser=do
About the comma:
What I mean is, it thinks that your username is:
docdailey, ctakes.umlspw=
and that your password is the out-of-box placeholder "CHANGEME"
-Original Message-
From: William Dailey [mailto:wdai...@gvmh.org]
Sent: Wednesday, July 08, 2015 5:52 PM
To: dev@ctakes.apache.org
Hi Britt,
You’ve got it exactly.
I actually started working on this right before a meeting right before I left
work right before I went to the store … but I’m now back to it and I’m going to
move forward with the tiny bot that I’ve got. I don’t think that it will take
too long …
One reason t
Thanks.. I put them on separate lines as separate set commands. Worked like a
charm. Now onto my next step, figuring out what I get and how to only get what
I want.
Help deeply appreciated.
Bill
William R. Dailey, MD, MS, MSMI
Physician/Chief of Medical Information
Golden Valley Memorial
Quite welcome, glad that it worked!
-Original Message-
From: William Dailey [mailto:wdai...@gvmh.org]
Sent: Wednesday, July 08, 2015 8:51 PM
To: dev@ctakes.apache.org
Subject: Re: Authentication failure - crossposted
Thanks.. I put them on separate lines as separate set commands. Worked
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