IntelliJ experience or instructions

2015-02-12 Thread taposh . d . roy
All - Did any one use IntelliJ? Are there any instructions using intelliJ? Regards, Taposh D. Roy Health Data Lead Decision Support Team Kaiser Permanente Program Office 1950 Franklin Street, 17th Floor Oakland, California 94588 510-987-4121 (Office) 510-206-1633 (cell) NOTICE TO RECIPIENT:

RE: IntelliJ experience or instructions

2015-02-12 Thread Finan, Sean
Hi Taposh, Try the process outlined below. I have screenshots for each step if you want them. If this works (you are the first tester) then we can put it in the web documentation. Sean Fresh checkout from SVN === 1. Start IntelliJ IDEa. 2. In the "Quick Start" menu, selec

BagOfCuisGenerator.java, same idea for getConceptText()

2015-02-12 Thread Maite Meseure Hugues
Hi everyone, I am currently working on BagOfCuisGenerator, and I would like to add the concept text to the output. I 've seen some discussions about getting the original text and UMLS preferred text in addition to the cui. Can someone give me pointers to do that? Thanks in advance for your time.

RE: BagOfCuisGenerator.java, same idea for getConceptText()

2015-02-12 Thread Finan, Sean
Try something like the following for output: private int extractFeatures( final IdentifiedAnnotation annotation ) { // Extract the IdentifiedAnnotation itself final Collection umlsInfos = getUmlsInfos( annotation, _printSnomed ); if ( umlsInfos == null ) { return 0

RE: BagOfCuisGenerator.java, same idea for getConceptText()

2015-02-12 Thread Finan, Sean
Oh yeah - use the -fast dictionary to get preferred text. The fastest way to get cuis only is with CuisOnlyPlaintextUMLSProcessor. If you want polarity make sure you uncomment the section with PolarityCleartkAnalysisEngine. Sean -Original Message- From: Maite Meseure Hugues [mailto:me