Thanks a lot Sean for your detailed reply. I've also found RunCPE.java that
allows to put the input and outpur directories in arguments in the
environment and do the same job than the CPE-GUI -at least in Eclipse, I
haven't managed to run it via the command line yet.
On Mon, Feb 2, 2015 at 7:12 PM
Hi Maite,
RunCPE is a good find, and if it fits your bil hten you should use it. But it
(if you mean the yTex class) doesn't take input and output directories from the
command line. It does take the path to a CPE.xml file. There is a cTakes
(non-yTex) equivalent named CmdLineCpeRunner. Eith
Oh yes my apologies, I mixed RunCPE that takes the cpe.xml and
BagofCuisGenerator that takes input and output directories in arguments.
Thanks for the pointer on CmlLineCpeRunner, I hadn't seen that.
On Tue, Feb 3, 2015 at 1:47 PM, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi Maite
The git mirrors for cTAKES seem to be either broken
(http://git.apache.org/ctakes.git) or embarrassingly out of sync
(https://github.com/apache/ctakes). Is this a known issue? I looked at
the INFRA ticket [1], but didn't see anything that suggested that
there should be a problem.
Steve
[1] https:
Hi Steve,
You are right (confirming your finding) - it looks like the first is a no-show
and the second is somebody's personal upload to github (not git.apache.org)
from 3 years ago. The jira claims that the item was closed (fixed), but if you
go to
https://urldefense.proofpoint.com/v2/url?u=
>
Sean,
Thank you for the detailed reply.
As you mentioned, I had to revert the capital letters from your Outlook, and
also, if somebody else wants to use the code and cannot get it to run: the
getFilesInDir method needs to return the populated Collection
fileList, the variable final File[] file
Hi Tol,
> Essentially, I want to know how to set up the cTAKES objects correctly into a
> pipeline in a Java programs, so that medical texts are annotated, like the
> GUI is doing. I would really appreciate any hints or how to accomplish this.
Looking at your embedded code I think that you've g
I added a comment to that infra ticket before I posted here, but no
response so far.
On Tue, Feb 3, 2015 at 2:51 PM, Finan, Sean
wrote:
> Hi Steve,
>
>
>
> You are right (confirming your finding) - it looks like the first is a
> no-show and the second is somebody's personal upload to github (not
