RE: cTAKES false positives, case-insensitivity

2016-06-01 Thread Finan, Sean
arameters or change foldernames for the dictionary-gui to get a similar numbers? Thanks, Tomasz From: Finan, Sean [sean.fi...@childrens.harvard.edu] Sent: Wednesday, June 01, 2016 2:40 PM To: dev@ctakes.apache.org Subject: RE: cTAKES false positives, case-i

RE: cTAKES false positives, case-insensitivity

2016-06-01 Thread Tomasz Oliwa
dictionary-gui to get a similar numbers? Thanks, Tomasz From: Finan, Sean [sean.fi...@childrens.harvard.edu] Sent: Wednesday, June 01, 2016 2:40 PM To: dev@ctakes.apache.org Subject: RE: cTAKES false positives, case-insensitivity Hi Tomasz, The change to

RE: cTAKES false positives, case-insensitivity

2016-06-01 Thread Finan, Sean
tor method, line 45. You cannot extend that class as it is immutable. Sean -Original Message- From: Tomasz Oliwa [mailto:ol...@uchicago.edu] Sent: Wednesday, June 01, 2016 3:20 PM To: dev@ctakes.apache.org Subject: RE: cTAKES false positives, case-insensitivity Another idea would be to

RE: cTAKES false positives, case-insensitivity

2016-06-01 Thread Tomasz Oliwa
, Tomasz From: Tomasz Oliwa [ol...@uchicago.edu] Sent: Wednesday, June 01, 2016 11:07 AM To: dev@ctakes.apache.org Subject: RE: cTAKES false positives, case-insensitivity Thank you all for the suggestions. Sean, by "make the AE case-sensitive" d

RE: cTAKES false positives, case-insensitivity

2016-06-01 Thread Tomasz Oliwa
_ From: Finan, Sean [sean.fi...@childrens.harvard.edu] Sent: Wednesday, June 01, 2016 10:56 AM To: dev@ctakes.apache.org Subject: RE: cTAKES false positives, case-insensitivity Oh - I should mention: Increasing the minimum required span cause have unwanted false negatives. A minimum of 5 will

RE: cTAKES false positives, case-insensitivity

2016-06-01 Thread Finan, Sean
That would probably be better. Also maybe meds with count < 5. You can even make the AE case-sensitive in case that helps. Sean -Original Message- From: Tomasz Oliwa [mailto:ol...@uchicago.edu] Sent: Wednesday, June 01, 2016 11:28 AM To: dev@ctakes.apache.org Subject: cT

RE: cTAKES false positives, case-insensitivity

2016-06-01 Thread Finan, Sean
From: Tomasz Oliwa [mailto:ol...@uchicago.edu] Sent: Wednesday, June 01, 2016 11:28 AM To: dev@ctakes.apache.org Subject: cTAKES false positives, case-insensitivity Hi, I have encountered false positives annotated with cTAKES that seem to come from case-insensitivity of the annotation lookup,

RE: cTAKES false positives, case-insensitivity

2016-06-01 Thread Savova, Guergana
..@uchicago.edu] Sent: Wednesday, June 1, 2016 11:28 AM To: dev@ctakes.apache.org Subject: cTAKES false positives, case-insensitivity Hi, I have encountered false positives annotated with cTAKES that seem to come from case-insensitivity of the annotation lookup, such as: Pt uses hearing aids. -&g

cTAKES false positives, case-insensitivity

2016-06-01 Thread Tomasz Oliwa
Hi, I have encountered false positives annotated with cTAKES that seem to come from case-insensitivity of the annotation lookup, such as: Pt uses hearing aids. -> "aids" is found as DiseaseDisorderMention cui=C0001175, Acquired Immunodeficiency Syndrome Pt values are all stable. -> "all" is fo