Re: Question about the pipeline

2015-02-10 Thread Maite Meseure Hugues
ly > > identical. > > > > Sean > > ____ > > From: Maite Meseure Hugues [meseure.ma...@gmail.com] > > Sent: Thursday, February 05, 2015 8:51 AM > > To: dev@ctakes.apache.org > > Subject: Re: Question about the pipeline &g

RE: Question about the pipeline

2015-02-05 Thread Finan, Sean
@ctakes.apache.org Subject: Re: Question about the pipeline Yes, it does but only in Eclipse, not in command line even though I am in the good directory. I have to look at the classpath more in details probably. Thanks for your replies. On Thu, Feb 5, 2015 at 8:08 AM, Finan, Sean < sean

Re: Question about the pipeline

2015-02-05 Thread Maite Meseure Hugues
sday, February 05, 2015 8:51 AM > To: dev@ctakes.apache.org > Subject: Re: Question about the pipeline > > I see. In my case, I am using the CPE descriptor saved from the GUI for > CmdLineCpeRunner as said Sean. I've selected > AggregatePlaintextProcessor.xml as AE b

RE: Question about the pipeline

2015-02-05 Thread Finan, Sean
015 8:51 AM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline I see. In my case, I am using the CPE descriptor saved from the GUI for CmdLineCpeRunner as said Sean. I've selected AggregatePlaintextProcessor.xml as AE but I have this error: "Couldn't initiali

Re: Question about the pipeline

2015-02-05 Thread Maite Meseure Hugues
t; > > -Original Message- > From: Maite Meseure Hugues [mailto:meseure.ma...@gmail.com] > Sent: Wednesday, February 04, 2015 12:59 PM > To: dev@ctakes.apache.org > Subject: Re: Question about the pipeline > > Interesting, Todd thank you and how do you use CMdLineCpeRunn

RE: Question about the pipeline

2015-02-04 Thread Lingren, Todd
@cchmc.org 513-803-9032 -Original Message- From: Maite Meseure Hugues [mailto:meseure.ma...@gmail.com] Sent: Wednesday, February 04, 2015 12:59 PM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Interesting, Todd thank you and how do you use CMdLineCpeRunner basically?

Re: Question about the pipeline

2015-02-04 Thread Maite Meseure Hugues
ildren’s Hospital > todd.ling...@cchmc.org > 513-803-9032 > > > -Original Message- > From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] > Sent: Tuesday, February 03, 2015 2:47 PM > To: dev@ctakes.apache.org > Subject: RE: Question about the pipeline >

RE: Question about the pipeline

2015-02-04 Thread Lingren, Todd
Lingren Biomedical Informatics Cincinnati Children’s Hospital todd.ling...@cchmc.org 513-803-9032 -Original Message- From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] Sent: Tuesday, February 03, 2015 2:47 PM To: dev@ctakes.apache.org Subject: RE: Question about the pipeline Hi

RE: Question about the pipeline

2015-02-03 Thread Finan, Sean
. Perhaps you can take a look at that and see if it helps? Sean -Original Message- From: Tol O. [mailto:tol...@gmail.com] Sent: Tuesday, February 03, 2015 7:35 PM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline > Sean, Thank you for the detailed reply. As you

Re: Question about the pipeline

2015-02-03 Thread Tol O .
ote the above code freehand, so MS Outlook is adding capital letters, etc. If you cut and paste > you'll need to change that - plus I haven't run/compiled, so there might be a typo or missed exception or > something. Or it may not work (in which case I'll throw in

Re: Question about the pipeline

2015-02-03 Thread Maite Meseure Hugues
Sean > > -Original Message- > From: Maite Meseure Hugues [mailto:meseure.ma...@gmail.com] > Sent: Tuesday, February 03, 2015 9:01 AM > To: dev@ctakes.apache.org > Subject: Re: Question about the pipeline > > Thanks a lot Sean for your detailed reply. I've also found Run

RE: Question about the pipeline

2015-02-03 Thread Finan, Sean
ma...@gmail.com] Sent: Tuesday, February 03, 2015 9:01 AM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Thanks a lot Sean for your detailed reply. I've also found RunCPE.java that allows to put the input and outpur directories in arguments in the environment and do the same

Re: Question about the pipeline

2015-02-03 Thread Maite Meseure Hugues
> Oh, and I wrote the above code freehand, so MS Outlook is adding capital > letters, etc. If you cut and paste you'll need to change that - plus I > haven't run/compiled, so there might be a typo or missed exception or > something. Or it may not work (in which ca

RE: Question about the pipeline

2015-02-02 Thread Finan, Sean
: Tol O. [mailto:tol...@gmail.com] Sent: Monday, February 02, 2015 6:56 PM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Maite Meseure Hugues writes: > > Hello all, > > Thank you for your preceding answers. > I have a few questions rega

Re: Question about the pipeline

2015-02-02 Thread Tol O .
Maite Meseure Hugues writes: > > Hello all, > > Thank you for your preceding answers. > I have a few questions regarding the pipeline example to run cTakes > programmatically. > I am running ExampleAggregatePipeline.java with ExampleHelloWorldAnnotator > but I would like to know how I can chang