+1 from me.
-Dennis
From: Savova, Guergana
Sent: Wednesday, May 15, 2024 2:26 PM
To: dev@ctakes.apache.org
Subject: RE: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
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+1 from me.
--Guergana
-Original Message-
From: Finan, Sean
Sent: Wednesday, May 15, 2024 1:32 PM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
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Thanks Tim!
From: Miller, Timothy
Sent: Wednesday, May 15, 2024 11:38 AM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
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* External Email
iller, Timothy
Sent: Tuesday, May 14, 2024 12:55 PM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
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* External Email - Caution *
I can check out and build successfully with mvn from the command line. I ca
profile
and script match.
I will check the wiki instructions and make sure that -exact- details are in
there.
Sean
From: Miller, Timothy
Sent: Tuesday, May 14, 2024 12:55 PM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release
Hi Tim,
Thanks for testing, I'll look into this.
Sean
From: Miller, Timothy
Sent: Tuesday, May 14, 2024 12:55 PM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
[SUSPICIOUS] [SUSPICIOUS] [SUSPI
: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
[SUSPICIOUS] [SUSPICIOUS]
* External Email - Caution *
What would you recommend for testing? Download the release tag to a clean
system and try to do mvn compile and run some tests?
Tim
From: Finan,
What would you recommend for testing? Download the release tag to a clean
system and try to do mvn compile and run some tests?
Tim
From: Finan, Sean
Date: Thursday, May 2, 2024 at 6:57 AM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL
hrough next Monday evening.
>
> Before the 6.0.0 release I will put some Release Manager information in
> the wiki. The maven release process using a GitHub repo requires a little
> trick that took me a long time to figure out, and the pre-release testing
> deserves some recorded d
> From: Peter Abramowitsch
> Sent: Friday, April 26, 2024 11:41 PM
> To: dev@ctakes.apache.org
> Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate
> [EXTERNAL]
>
> * External Email - Caution *
>
>
> Hi Sean,
>
> It all compiles, bu
t
> be able to fetch them from your .m2 directory.
>
> I haven't been able to duplicate the ytex problems that you see and don't
> know what might be causing them.
>
> Sean
>
> ________________
> From: gandhi rajan
> Sent: Tuesday, April
x27;t
> know what might be causing them.
>
> Sean
>
>
> From: gandhi rajan
> Sent: Tuesday, April 30, 2024 11:18 AM
> To: dev@ctakes.apache.org
> Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate
> [EXTERNAL]
>
> * Ext
test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
* External Email - Caution *
Hi Sean,
It all compiles, but one of the jars is missing from the distribution.
It's the one I added: ctakes-mastif-zoner which is required if you're
going to use the Zone Annotator.
It's in
ven't been able to duplicate the ytex problems that you see and don't know
what might be causing them.
Sean
From: gandhi rajan
Sent: Tuesday, April 30, 2024 11:18 AM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release cand
Hi Peter,
Thanks for the response. I dont think the generate test action is trying to
use mysql but hsql DB. Anyways, I am able to build other modules apart from
ytex and ytex-uima module.
Sean, did you try building ctakes-web-rest module by any chance? It seems
to be broken in my case.
On Tue,
Hi Gandhi, I think the email from Jeff Painter may explain your
situation. It's a question of your version of mysql being new. The
crucial lines in your trace are:
org.apache.ctakes.jdl.AppMain.main(AppMain.java:84)
[INFO] [java] Caused by:
java.lang.reflect.InaccessibleObjectException: U
HI Peter,
Thanks for the insights. I tried to debug from AppMain.java and it
eventually fails in
"org.apache.ctakes.jdl.data.xml.jaxb.ObjectFactoryBind.(ObjectFactoryBind.java:43)"
Attaching the complete stacktrace for reference:
[INFO] [java] invoking method
[INFO] [java] Exception i
Also, depending on your setup, newer versions of MySQL will break with
current code until my PRs are incorporated :-)
https://github.com/apache/ctakes/pull/10
https://github.com/apache/ctakes/pull/13
https://github.com/apache/ctakes/pull/14
https://github.com/apache/ctakes/pull/16
#10 adds supp
e: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
* External Email - Caution *
I think this is the class where Java is exiting with 1
/ctakes-ytex/src/test/java/org/apache/ctakes/jdl/AppMainTest.java
btw my environment is MacOS and I notice yours is Windows, so the root
cause
I think this is the class where Java is exiting with 1
/ctakes-ytex/src/test/java/org/apache/ctakes/jdl/AppMainTest.java
btw my environment is MacOS and I notice yours is Windows, so the root
cause why this class is giving you trouble is something I wouldn't be able
to help you with. But some deb
Hi Gandhi
This project is an odd one in the sense that when you tell it to skip the
tests, it still goes through the effort in building up the db environment
that the tests would use. But in any case, for me it does build either
way. In the attached log, I've run a maven clean before doing the bu
previous build.
Sean
From: gandhi rajan
Sent: Monday, April 29, 2024 7:54 AM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]
* External Email - Caution *
Thanks for the insights Peter. I dint make it clear
Hi Peter,
Thank you for testing! I will see if I can get the mastif-zoner in the
distribution and push a 5.1.1 candidate.
From: Peter Abramowitsch
Sent: Saturday, April 27, 2024 1:48 AM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES
Thanks for the insights Peter. I dint make it clear that I did ran the
install on ytex module with test case execution toggled off. I used the
following command - "mvn -e clean install -Dmaven.test.skip=true" and I
still hit the same error.
On digging deep, I could find that the build process is t
Hi Gandhi
Your error appears to be at this line
C:\Gandhi\Project\ctakes-5.1.0\ctakes-ytex\scripts\data\build.xml:456: Java
returned: 1
A test application being run here: AppMain is in charge of loading a
temporary mysqldb that is used to test that part of ytex. For me it is
working, but if y
Hi Sean,
When I tried to build the complete ctakes suite, i get build failure for
ctakes-ytex module with the following error:
[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-antrun-plugin:3.1.0:run
(generate-test-config) on project ctakes-ytex: An Ant BuildException has
occured: Th
Hi again Sean
Perfect Compile
Within our context and our pipeline, it runs well.
Tried with simple and complex pipelines.
I have not used most of the piperRunner/Creator/ scripts.
I haven't exercised any of the PBJ stuff yet.
I don't use the REST projects or the YTEX DB stuff - we have our own
Apa
Hi Sean,
It all compiles, but one of the jars is missing from the distribution.
It's the one I added: ctakes-mastif-zoner which is required if you're
going to use the Zone Annotator.
It's in the master pom, and in the pom of ctakes-distribution, and the jar
got built in its projecte, but it's no
Hi Sean
I'll do a runthrough. But looking through the commits, except for label
changes, it looks as if most of the last code additions & changes were mine
from a couple of months ago. I'm planning to put this release (wrapped in
our webservice framework) into production in a month or so.
Peter
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