Re: Post co-ordinated SNOMED-CT with AggregatePlaintextFastUMLSProcessor

2016-10-23 Thread Lacey A . S .
Lacey Research Analyst SAIL Databank Swansea Neuroscience Research Group 01792 602023 a.s.la...@swansea.ac.uk From: Azad Dehghan Sent: 23 Oct 2016 08:25 To: dev@ctakes.apache.org Subject: Re: Post co-ordinated SNOMED-CT with AggregatePlaintextFastUMLSProcessor Arro

Re: Post co-ordinated SNOMED-CT with AggregatePlaintextFastUMLSProcessor

2016-10-23 Thread Azad Dehghan
Arron, I would likewise follow peter's approach but the more flexible and recommended approach would be to use RUTA rule-based language: https://uima.apache.org/ruta.html Best wishes, Azad On 21 Oct 2016 21:18, "Abramowitsch, Peter" wrote: > > While it is doable, it will need some non trivial p

Re: Post co-ordinated SNOMED-CT with AggregatePlaintextFastUMLSProcessor

2016-10-21 Thread Abramowitsch, Peter
While it is doable, it will need some non trivial post processing. The approach I suggest below is just an example, there are many ways to achieve this, but there is no silver bullet. To do something like that I suggest incorporating a TokensRegex analysis engine in your pipeline. I have had a lo

RE: Post co-ordinated SNOMED-CT with AggregatePlaintextFastUMLSProcessor

2016-10-20 Thread Finan, Sean
Hi Arron, Ctakes discovers text words and phrases by lookup using a subset of the UMLS https://uts.nlm.nih.gov/home.htmlctakes then assigns a code to everything that it finds. While you can employ various workarounds to remove "epilepsy" in when within "epilepsy clinic", these are not part