Re: [Relation_Extraction] Ctakes relation extraction

2017-03-07 Thread Dligach, Dmitriy
ole:Argument >> Argument2: symptoms >> Role:Related_to >> >> Category is O. >> Could you please help me with getting right results for other relations >> extraction annotators ? >> >> I've attached my ae descriptors. They are p

Re: [Relation_Extraction] Ctakes relation extraction

2017-03-06 Thread Oleg Bogatiryov
che.org Sent: Monday, March 6, 2017 8:08:01 PM Subject: Re: [Relation_Extraction] Ctakes relation extraction Hi Oleg, Currently, cTAKES only includes the models for locationOf and DegreeOf relations. Even though I added the code for other relation types a while ago, we haven’t released the mo

Re: [Relation_Extraction] Ctakes relation extraction

2017-03-06 Thread Dligach, Dmitriy
xecute RelationExtractorPipelineSingleCas but it >> doesn't print anything related to relations. >> >> Could you please help me with extraction of relations from the med text ? >> >> As I am a new to ctakes and uima could you please provide step to step >

[Relation_Extraction] RE: Ctakes relation extraction

2017-03-06 Thread Oleg Bogatiryov
..@luc.edu] Sent: Tuesday, February 28, 2017 1:58 To: dev@ctakes.apache.org Subject: Re: Ctakes relation extraction Hi Oleg, You may want to look into learning about UIMA and UIMAFIT. Once you are somewhat comfortable with these frameworks, take a look at the package: ctakes/ctakes-relation-extractor

RE: [Relation_Extraction] RE: Ctakes relation extraction

2017-03-06 Thread Oleg Bogatiryov
anks in advance, Oleg. -Original Message- From: Oleg Bogatiryov [mailto:oleg.bogatir...@ctco.lv] Sent: Monday, March 06, 2017 12:19 To: 'ddlig...@luc.edu' Cc: 'dev@ctakes.apache.org' Subject: [Relation_Extraction] RE: Ctakes relation extraction Hi Dmitriy. Thank

Re: Ctakes relation extraction

2017-02-27 Thread Dligach, Dmitriy
m: Dligach, Dmitriy [mailto:ddlig...@luc.edu] > Sent: 20 февраля 2017 г. 17:48 > To: dev@ctakes.apache.org > Subject: Re: Ctakes relation extraction > > Hi Oleg, > > The relation extraction AE currently only handles location_of and degree_of > relations as described here

RE: Ctakes relation extraction

2017-02-24 Thread Oleg Bogatiryov
ses to use. Thanks in advance, Oleg. -Original Message- From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] Sent: 20 февраля 2017 г. 17:48 To: dev@ctakes.apache.org Subject: Re: Ctakes relation extraction Hi Oleg, The relation extraction AE currently only handles location_of and degree_of

Re: Ctakes relation extraction

2017-02-20 Thread Abramowitsch, Peter
---Original Message- >From: Abramowitsch, Peter [mailto:pabramowit...@hearst.com] >Sent: Monday, February 20, 2017 1:19 PM >To: dev@ctakes.apache.org >Subject: Re: Ctakes relation extraction > >There is another, more generic NLP engine, StanfordCoreNLP which does &

RE: Ctakes relation extraction

2017-02-20 Thread Savova, Guergana
: dev@ctakes.apache.org Subject: Re: Ctakes relation extraction There is another, more generic NLP engine, StanfordCoreNLP which does have more advanced CORel annotation capabilities, but it is not specifically tuned to clinical concepts and relationships. So for instance, causal relationships mig

Re: Ctakes relation extraction

2017-02-20 Thread Abramowitsch, Peter
There is another, more generic NLP engine, StanfordCoreNLP which does have more advanced CORel annotation capabilities, but it is not specifically tuned to clinical concepts and relationships. So for instance, causal relationships might be detected if expressed in standard english, but certainly n

Re: Ctakes relation extraction

2017-02-20 Thread Dligach, Dmitriy
Hi Oleg, The relation extraction AE currently only handles location_of and degree_of relations as described here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3994852/ The dependencies are handled by the dependency parser (i.e. a separate module). So you’ll need to run both and collect all an

Ctakes relation extraction

2017-02-19 Thread Oleg Bogatiryov
Hello to everyone. I am pleased to join the group. I am trying to extract relation from the document. Ideally I'd like to get the graph or tree of dependencies/relations from the clinical documents. Could you please let me know how can I achieve it ? I am able to run CVD and Relati