his out.
>
> Sean
>
>
> From: Ryan Young
> Sent: Tuesday, March 31, 2020 10:13 PM
> To: dev@ctakes.apache.org
> Subject: Re: Configure Fast Lookup Dictionary To Return Only 1 UMLS Code
> (CUI) [EXTERNAL]
>
> * External Em
w for you in a little bit and maybe we can figure this
out.
Sean
From: Ryan Young
Sent: Tuesday, March 31, 2020 10:13 PM
To: dev@ctakes.apache.org
Subject: Re: Configure Fast Lookup Dictionary To Return Only 1 UMLS Code (CUI)
[EXTERNAL]
* External
>writer.write( "\n" );
> } else {
>
> >> writer.write( cui + "\n" );
> >>}
> >> }
> >> }
> >> }
> >>}
> >> }
>
>
> So, after
>
maven package step
3. Unzipping your ctakes installation
You should be able to
1. Run ctakes from command line like you did before
2. Use the custom piper file
3. Resolve the firstly-discovered procedure for a snippet on each line
4. Write file(s) with corresponding line-by-line cuis or empt
arator.comparingInt(
>> ProcedureMention::getBegin ) )
>> .orElse( null );
>> if ( firstProcedure != null ) {
>>String cui
>> = OntologyConceptUtil.getCuis( firstProcedure )
>>
; .findFirst()
> .orElse( "" );
>if ( !cui.isEmpty() ) {
> writer.write( cui + "\n" );
> }
> }
> }
> }
>}
> }
>
> __
if ( !cui.isEmpty() ) {
writer.write( cui + "\n" );
}
}
}
}
}
}
From: Ryan Young
Sent: Monday, March 23, 2020 11:02 AM
To: dev@ctakes.apache.org
Subject: Configure Fast Lookup Dictionary To Retu
cribble up something more and send it in a minute ...
Sean
From: Ryan Young
Sent: Monday, March 23, 2020 11:02 AM
To: dev@ctakes.apache.org
Subject: Configure Fast Lookup Dictionary To Return Only 1 UMLS Code (CUI)
[EXTERNAL]
* External Email - Caution *
He
Hello,
I am a medical student who happened to come across cTAKES for a project I
am working on. What I would like to do is take a list of surgeries in a
text file and have cTAKES output what it determines to be the best UMLS
code (CUI) for that particular line.
Each line of the text file is indep
