Hi All
It turns out that the code to approve UMLS usage is duplicated and exists
in two different jars. My upgrade was only in the class UmlsUserApprover,
but after some head scratching to explain what I was seeing, I discovered
that there's an earlier version of the same code still buried in
./
>if I make any changes I can simply rename the file and run it again
I haven't tried that and it is an interesting idea.
I think that you can run multiple times as long as there aren't any annotators
that try to persist something immutable through a complete run and throw
exceptions if the next
Hi Gandhi
If you hang on a bit for some of it, it will save you having to revise.
Yesterday I attached the instructions I had given for using the new code in
the trunk environment and that will give you a good overview. But there
may be some minor differences in the backport. This is because
I will be done with the UmlsUserApprover 4.0.0 backport by tomorrow.
It's working already but I need to try all the ways of setting the auth
params. A bit of the
infrastructure around CLI and Envvars in the UimaContext is different.
Peter
On Wed, Nov 25, 2020 at 3:08 PM Miller, Timothy <
timothy
Hi Sean,
Can pick up wiki update if I could get some guidance on what exactly need
to be updated and will proceed from there.
On Tue, Nov 24, 2020 at 11:53 PM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi Gandhi,
>
> That would be great!
>
> I think that an additional test would be
So many thanks for a prompt response Sean - I have used previous responses of
yours to other requests and it always helped when I was changing source code!
(Examples is the only place I never checked and the obvious one -why is it
called examples , Eugenia ?).
Also can I please ask - I thought
Oh -- ctakes-clinical-pipeline does not have ctakes-gui as a dependency. So if
you want to put the profile in that pom then you will also need to add
ctakes-gui as a dependency in that pom.
From: Finan, Sean
Sent: Wednesday, November 25, 2020 9:30 AM
To:
Hi Eugenia,
I am glad that you are a fan!
The trunk version has a profile to start the piper file submitter gui defined
in the ctakes-examples pom.
However, the 4.0 release does not have a profile to do so.
If you want to use a pfs gui profile in 4.0 then you will need to edit a
downstream
That link doesn't say anything there about incremental update releases,
but even with the normal process I think we can get 4.0.1 out faster
than usual because it is such a small change and there are unlikely to
be multiple RCs to get one that works for everyone.
Does anyone want to volunteer to be
Hello,
cTakes newbie and big fan so far!
I have installed and been using the user version (4.0.0) and the source code as
per the developer install guide and have tried a few pipelines. I wanted to use
the piper file submitter gui exposed by the developer version but I cannot
locate an active pr
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