using ctakes in an app -

2017-10-06 Thread Melvin Ma
This is more of a newbie question but I have not found a good document about it. Please help. As of now, my requirements appear to be : 1> use existing ctakes pipelines; 2> maybe develop one or two on my own 3> provide services (like a web server) To do that, it seems I could do the followi

Re: building cTAKES (discussion transferred from CTAKES-445 [EXTERNAL]

2017-10-06 Thread Hadrian Zbarcea
Personally, I would prefer Sean's idea and I think it'd be easy to implement using org.junit.Assume [1]. The drawback is that one *must* remember to setup the umls credentials to run the tests during a release, whereas the maven profiles enforce that. But either is fine. My $0.02, Hadrian [1]

Re: building cTAKES (discussion transferred from CTAKES-445 [EXTERNAL]

2017-10-06 Thread James Masanz
Alex, I forgot to add: thanks for all your work on these changes and improvements. regarding your email Sean, I think a small non-umls custom dictionary for a pipeline test would be great. And test(s) with combined hsql and bsv would also be great. I don't know they necessarily need to be outside

Re: building cTAKES (discussion transferred from CTAKES-445 [EXTERNAL]

2017-10-06 Thread James Masanz
Alex, I like the idea of "*2 profiles (in pom.xml), one *with* UMLS **account and one *without**". However, I would have just the one without the credentials be part of the Jenkins job and someone would manually run the other one as part of the release process (or whenever someone felt it was warr

RE: building cTAKES (discussion transferred from CTAKES-445 [EXTERNAL]

2017-10-06 Thread Finan, Sean
Hi Alex, I think that it goes against the umls license to have credentials available to the public. That might be what you were saying in a previous email: > Exporting the ctakes_umlsuser, ctakes_umlspw makes the whole build > succeed. But having some credentials in the Jenkins job (official)

Re: building cTAKES (discussion transferred from CTAKES-445

2017-10-06 Thread Alexandru Zbarcea
I started to look for ways to make the build stable. After applying patch for CTAKES-334, the only issue remains with: testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS Processor with name "RegressionPipelineAggregateTest" failed. which is caused by: ERROR