RE: Getting ctakes smoking-status component to run in Eclipse (repost)

2016-01-12 Thread Tomasz Oliwa
Patrick, I have the smoking-status component of cTAKES running without exceptions. I also combined it into the AggregatePlaintextFastUMLSProcessor, on https://issues.apache.org/jira/browse/CTAKES-370 you can find my AggregatePlaintextFastUMLSProcessor.xml and the necessary steps on how to inte

RE: Getting ctakes smoking-status component to run in Eclipse (repost)

2016-01-12 Thread Patrick Eads
Hello all, I am reposting this on the advice of a developer. Below please find the comment thread already in progress. We are trying to get the ctakes smoking-status component to run after getting the code from SVN and successfully compiling it. Following all of the steps here: https://urldef

Re: Combining Knowledge- and Data-driven Methods for De-identification of Clinical Narratives

2016-01-12 Thread Peter Klügl
Hi, Ruta requires a newer uima version since Marshall fixed some bugs. In previous ruta versions there were workarounds but I removed them in the latest version(s). Thus, using ruta with such an old uima version could lead to flawed rule inference. I would recommend ugrading to the latest uima ve