YTEX semantic similarity concept graph questions

2014-10-15 Thread John Green
Hope this finds everyone well. It is not immediately clear to me why select distinct cui1, cui2 from umls.MRREL where sab in ('SNOMEDCT') and rel in ('PAR') order by cui1, cui2 would only be selecting the relationship (REL) of PAR. Im not sure the selectio

Re: YTEX depends on trove4j? LGPL issue

2014-10-15 Thread vijay garla
YTEX has several non ASF compliant dependencies, and I thought I had reviewed them and excluded them from the cTAKES distro. The non-ASF YTEX dependencies should be excluded in the ctakes-distribution\src\main\assembly\bin.xml We distribute the non ASF dependencies similarly to ctakes resources (i.

Re: YTEX depends on trove4j? LGPL issue

2014-10-15 Thread Richard Eckart de Castilho
On 15.10.2014, at 19:41, Steven Bethard wrote: > In addition to fixing the trove4j dependency, if anyone knows how to > get a report of all dependency licenses, it would be good to > double-check the rest of the YTEX dependencies to make sure there > aren't other issues. We do that in UIMA. Ther

Re: YTEX depends on trove4j? LGPL issue

2014-10-15 Thread Steven Bethard
In addition to fixing the trove4j dependency, if anyone knows how to get a report of all dependency licenses, it would be good to double-check the rest of the YTEX dependencies to make sure there aren't other issues. On Wed, Oct 15, 2014 at 10:42 AM, Chen, Pei wrote: > Steve, > This is a good cat

Re: YTEX depends on trove4j? LGPL issue

2014-10-15 Thread Steven Bethard
Trove is on LGPL 2.1, and Apache forbids LGPL 2, 2.1 and 3. On Wed, Oct 15, 2014 at 10:45 AM, Savova, Guergana wrote: > At one point (some long time ago), I remember LGPL was compatible with > Apache. What version of LGPL is this dependency using? > --Guergana > > -Original Message- > Fr

RE: YTEX depends on trove4j? LGPL issue

2014-10-15 Thread Savova, Guergana
At one point (some long time ago), I remember LGPL was compatible with Apache. What version of LGPL is this dependency using? --Guergana -Original Message- From: Chen, Pei [mailto:pei.c...@childrens.harvard.edu] Sent: Wednesday, October 15, 2014 11:43 AM To: dev@ctakes.apache.org Subject

RE: YTEX depends on trove4j? LGPL issue

2014-10-15 Thread Chen, Pei
Steve, This is a good catch! I was pretty sure 3rd party libs were checked but somehow this may have been missed. I noticed it's in the convenience binary distro as well. We need to remove this; I'll create a Jira. VJ, could you confirm- I actually don't think we use trove4j in ytex? ctakes-yt

YTEX depends on trove4j? LGPL issue

2014-10-15 Thread Steven Bethard
It seems that YTEX depends on trove4j which is LGPL [1], but "LGPL-licensed works must not be included in Apache products" [2]. Have the YTEX dependencies been reviewed for licensing issues? (I only stumbled upon the trove issue via a version conflict in other code.) Steve [1] http://trove4j.sour