Bug#1018887: ITP: cwl-utils -- Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: cwl-utils -- Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2 Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: cwl-utils Version : 0.16 Upstream Author

Bug#1022044: ITP: pytest-httpserver -- HTTP server for pytest to test HTTP clients

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: pytest-httpserver -- HTTP server for pytest to test HTTP clients Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: pytest-httpserver Version : 1.0.6 Upstream Author : Zsolt

Bug#1022057: ITP: seqan-raptor -- pre-filter for querying very large collections of nucleotide sequences

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: seqan-raptor -- pre-filter for querying very large collections of nucleotide sequences Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: seqan-raptor Version : 2.0.0.0

Bug#1079678: ITP: r-bioc-golubesets -- exprSets for golub leukemia data

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-golubesets -- exprSets for golub leukemia data Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-golubesets Version : 1.46.0 Upstream

Bug#1037201: ITP: cwltest -- Common Workflow Language testing framework

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: cwltest -- Common Workflow Language testing framework Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: cwltest Version : 2.3.20230607140609 Upstream Author : CWL, a project of

Bug#1039956: ITP: subarch-select -- Select among binaries based upon x86 microarchitecture support

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: subarch-select -- Select among binaries based upon x86 microarchitecture support Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: subarch-select Version : 0.1 Upstream Author

Bug#1051798: ITP: python-pcre2 -- Python bindings for the PCRE2 regular expression library

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-pcre2 -- Python bindings for the PCRE2 regular expression library Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-pcre2 Version : 0.2.0+ds Upstream Author : grtetrault

Bug#1023322: ITP: seqan-needle -- pre-filter for the counting of very large collections of nucleotide sequences

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: seqan-needle -- pre-filter for the counting of very large collections of nucleotide sequences Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: seqan-needle Version : 1.0.1.0.0

Bug#1061293: ITP: python-spython -- Command line python tool for working with Singularity

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-spython -- Command line python tool for working with Singularity Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-spython Version : 0.3.13 Upstream Author : , Vanessa Sochat

Bug#1066026: ITP: python-pytest-retry -- Adds the ability to retry flaky tests in pytest

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-pytest-retry -- Adds the ability to retry flaky tests in pytest Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-pytest-retry Version : 1.6.2 Upstream Author : Copyright: (c

Bug#1067114: ITP: python-sphinx-codeautolink -- Automatic links from code examples to reference documentation

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-sphinx-codeautolink -- Automatic links from code examples to reference documentation Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-sphinx-codeautolink Version : 0.15.0

Bug#994403: ITP: python-types-toml -- Typing stubs for toml

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-toml -- Typing stubs for toml Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-toml Version : 0.1.5 Upstream Author : * URL : https

Bug#994404: ITP: python-types-typed-ast -- Typing stubs for typed-ast

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-typed-ast -- Typing stubs for typed-ast Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-typed-ast Version : 1.4.4 Upstream Author : * URL

Bug#994599: ITP: python-tomli -- lil' TOML parser for Python

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-tomli -- lil' TOML parser for Python Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-tomli Version : 1.2.1 Upstream Author : Taneli Hukkinen

Bug#994830: ITP: python-types-dataclasses -- Typing stubs for dataclasses

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-dataclasses -- Typing stubs for dataclasses Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-dataclasses Version : 0.1.7 Upstream Author : Gary van

Bug#1069568: ITP: python-hatch-mypyc -- Hatch build hook plugin for Mypyc

Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-hatch-mypyc Version : 0.16.0 Upstream Author : Ofek Lev * URL : https://github.com/ofek/hatch-mypyc * License : Expat Programming Lang: Python Description : Hatch build hook plugin for Mypyc Provides a build hook

Bug#1076018: ITP: r-bioc-alabaster.schemas -- Schemas for the Alabaster Framework

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-alabaster.schemas -- Schemas for the Alabaster Framework Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-alabaster.schemas Version : 1.4.0+ds

Bug#1076020: ITP: r-bioc-alabaster.base -- Save Bioconductor Objects To File

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-alabaster.base -- Save Bioconductor Objects To File Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-alabaster.base Version : 1.4.2 Upstream Author

Bug#1076024: ITP: r-bioc-ucsc.utils -- Low-level utilities to retrieve data from the UCSC Genome

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-ucsc.utils -- Low-level utilities to retrieve data from the UCSC Genome Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-ucsc.utils Version : 1.0.0

Bug#1076033: ITP: r-bioc-gypsum -- Interface to the gypsum REST API

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-gypsum -- Interface to the gypsum REST API Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-gypsum Version : 1.0.1+ds Upstream Author : Aaron Lun

Bug#1076039: ITP: r-bioc-pwalign -- Perform pairwise sequence alignments

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-pwalign -- Perform pairwise sequence alignments Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-pwalign Version : 1.0.0 Upstream Author : Patrick

Bug#1076055: ITP: r-cran-httptest2 -- Test Helpers for 'httr2'

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-cran-httptest2 -- Test Helpers for 'httr2' Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-cran-httptest2 Version : 1.1.0+ds Upstream Aut

Bug#1076066: ITP: r-bioc-txdbmaker -- Tools for making TxDb objects from genomic annotations

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-txdbmaker -- Tools for making TxDb objects from genomic annotations Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-txdbmaker Version : 1.0.1+ds

Bug#1076073: ITP: r-bioc-alabaster.sce -- Load and Save SingleCellExperiment from File

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-alabaster.sce -- Load and Save SingleCellExperiment from File Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-alabaster.sce Version : 1.4.0+ds

Bug#1076074: ITP: r-bioc-alabaster.se -- Load and Save SummarizedExperiments from File

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-alabaster.se -- Load and Save SummarizedExperiments from File Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-alabaster.se Version : 1.4.1+ds

Bug#1076075: ITP: r-bioc-alabaster.matrix -- Load and Save Artifacts from File

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-alabaster.matrix -- Load and Save Artifacts from File Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-alabaster.matrix Version : 1.4.2+ds Upstream

Bug#1076077: ITP: r-bioc-alabaster.ranges -- Load and Save Ranges-related Artifacts from File

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-alabaster.ranges -- Load and Save Ranges-related Artifacts from File Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-alabaster.ranges Version

Bug#1076092: ITP: r-bioc-spatialexperiment -- S4 Class for Spatially Resolved -omics Data

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-spatialexperiment -- S4 Class for Spatially Resolved -omics Data Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-spatialexperiment Version

Bug#1076191: ITP: r-cran-rmariadb -- Database Interface and 'MariaDB' Driver

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-cran-rmariadb -- Database Interface and 'MariaDB' Driver Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-cran-rmariadb Version : 1.3.2+ds Upstr

Bug#1076277: ITP: r-bioc-hgu95a.db -- Affymetrix Affymetrix HG_U95A Array annotation data (chip

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-hgu95a.db -- Affymetrix Affymetrix HG_U95A Array annotation data (chip Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-hgu95a.db Version : 3.13.0

Bug#1076276: ITP: r-bioc-gsvadata -- Data employed in the vignette of the GSVA package

Package: wnpp Severity: wishlist X-Debbugs-Cc: debia...@lists.debian.org, cru...@debian.org Subject: ITP: r-bioc-gsvadata -- Data employed in the vignette of the GSVA package Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : r-bioc-gsvadata Version : 1.40.0 Upstream

Bug#800412: ITP: transrate-tools -- command line tool used by transrate to process BAM files

Package: wnpp Owner: "Debian Med Team" Severity: wishlist X-Debbugs-CC: debian-...@lists.debian.org * Package name: transrate-tools Version : 1.0.0 Upstream Author : Richard Smith-Unna & Chris Boursnell * URL : https://github.com/Blahah/transrate-tools * License

Bug#890061: ITP: galaxy-lib -- Subset of Galaxy core code base designed to be used

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: galaxy-lib Version : 17.9.10 Upstream Author : Galaxy Project and Community * URL : https://github.com/galaxyproject/galaxy-lib * License : AFL Programming Lang: Python Description

Bug#890752: ITP: ctdopts -- Gives your Python tools a CTD-compatible interface

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: ctdopts Version : 1.2 Upstream Author : Andras Szolek et al. * URL : https://github.com/WorkflowConversion/CTDopts * License : GPL-3+ Programming Lang: Python Description : Gives yo

Bug#890755: ITP: ctdconverter -- Convert CTD files into Galaxy tool and CWL CommandLineTool files

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: ctdconverter Version : 2.0 Upstream Author : WorkflowConversion * URL : https://github.com/WorkflowConversion/CTDConverter/ * License : GPL-3 / Apache-2.0 Programming Lang: Python Descr

Bug#860746: ITP: easel -- a library of C functions for biological sequence analysis

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: easel Version : 0.43 Upstream Author : Sean R. Eddy * URL : https://github.com/EddyRivasLab/easel * License : BSD-3-clause Programming Lang: C Description : a library of C function

Bug#813827: ITP: python-rdflib-jsonld -- rdflib extension adding JSON-LD parser and serializer

Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: python-rdflib-jsonld Version : 0.3 Upstream Author : RDFLib Team * URL : https://github.com/RDFLib/rdflib-jsonld * License : BSD Programming Lang: Python Description : rdflib extens

Bug#813839: ITP: python-schema-salad -- rdflib extension adding JSON-LD parser and serializer

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-schema-salad Version : 1.6.2016020448 Upstream Author : Common workflow language working group * URL : https://pypi.python.org/pypi/schema-salad * License : Apache-2.0 Progra

Bug#814000: ITP: cwltool -- Common workflow language reference implementation

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: cwltool Version : 1.0.20160203221531 Upstream Author : Common Workflow Language working group * URL : http://www.commonwl.org * License : Apache-2.0 Programming Lang: Python Descripti

Bug#814050: ITP: varna -- Visualization Applet for RNA

Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: varna Version : 3-93 Upstream Author : Kevin Darty, Alain Denise and Yann Ponty * URL : http://varna.lri.fr/ * License : GPL-3 Programming Lang: Java Description : Visualization A

Bug#817056: ITP: python-typing -- Type Hints for Python

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-typing Version : 3.5.0.1 Upstream Author : Guido van Rossum, Jukka Lehtosalo, Łukasz Langa * URL : https://docs.python.org/3.5/library/typing.html * License : Python 2.0 Programm

Bug#817056: ITP: python-typing -- Type Hints for Python

at 7:38 PM, Scott Kitterman wrote: > On Monday, March 07, 2016 09:01:30 AM Michael R. Crusoe wrote: > > Package: wnpp > > Severity: wishlist > > Owner: Debian Med team > > > > * Package name: python-typing > > Version : 3.5.0.1 > > U

Bug#817056: ITP: python-typing -- Type Hints for Python

See https://www.python.org/dev/peps/pep-0484/#suggested-syntax-for-python-2-7-and-straddling-code Pe 8 mar. 2016 06:24, "Brian May" a scris: > "Michael R. Crusoe" writes: > > > This is a backport of the standard library typing module to Python > > vers

Bug#841047: ITP: r-hms-dbmi-spp -- GNU R package for processing ChIP-seq & other functional sequencing data

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-hms-dbmi-spp Version : 1.14 Upstream Author : peterK * URL : http://compbio.med.harvard.edu/Supplements/ChIP-seq/ * License : GPL-2 Programming Lang: R, C++ Description : GNU R p

Bug#823512: ITP: mypy -- Optional static typing for Python

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: mypy Version : 0.3.1 Upstream Author : Jukka Lehtosalo * URL : http://www.mypy-lang.org/ * License : MIT Programming Lang: Python Description : Optional static typing for Python A

Bug#828176: ITP: cnvkit -- Copy number variant detection from targeted DNA sequencing

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: cnvkit Version : 0.7.11 Upstream Author : Eric Talevich * URL : http://cnvkit.readthedocs.io/ * License : Apache-2.0 Programming Lang: Python Description : Copy number variant dete

Bug#828184: ITP: r-cran-r.cache -- R package: Fast and Light-Weight Caching of Objects and Results

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-r.cache Version : 0.12.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/R.cache * License : LGPL (>= 2.1) Programming Lang: R Description : R

Bug#828189: ITP: r-bioc-dnacopy -- R package: DNA copy number data analysis

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-dnacopy Version : 1.46.0 Upstream Author : Venkatraman E. Seshan * URL : http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html * License : GPL-2.0+ Programming Lang

Bug#828194: ITP: r-cran-listenv -- R package: Environments Behaving (Almost) as Lists

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-listenv Version : 0.6.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/listenv * License : LGPL 2.1+ Programming Lang: R Description : R packa

Bug#828196: ITP: r-cran-globals -- R package: Identify Global Objects in R Expressions

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-globals Version : 0.6.1 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/globals * License : LGPL-2.1+ Programming Lang: R Description : R packa

Bug#828197: ITP: r-cran-future -- R package: A Future API for R

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-future Version : 1.0.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/future * License : LGPL-2.1+ Programming Lang: R Description : R package

Bug#828690: ITP: r-cran-pscbs -- R package: Analysis of Parent-Specific DNA Copy Numbers

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-pscbs Version : 0.61.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/PSCBS * License : GPL-2+ Programming Lang: R Description : R package: An

Bug#828796: ITP: r-bioc-geneplotter -- R package of functions for plotting genomic data

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-geneplotter Version : 1.50.0 Upstream Author : Bioconductor Package Maintainer * URL : http://bioconductor.org/packages/geneplotter/ * License : Artistic-2.0 Programming Lang: R

Bug#828850: ITP: r-bioc-deseq2 -- R package for RNA-Seq Differential Expression Analysis

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-deseq2 Version : 1.12.3 Upstream Author : Michael Love * URL : https://bioconductor.org/packages/DESeq2 * License : LGPL-3+ Programming Lang: R Description : R package for R

Bug#851358: ITP: python-pybedtools -- Python wrapper around BEDTools for bioinformatics work

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-pybedtools Version : 0.7.8 Upstream Author : Ryan Dale * URL : https://github.com/daler/pybedtools * License : GPL 2+ Programming Lang: Python, Cython, Description : Python

Bug#851488: ITP: python-gffutils -- Work with GFF and GTF files in a flexible database framework

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-gffutils Version : 0.8.7.1 Upstream Author : Ryan Dale * URL : http://daler.github.io/gffutils/ * License : MIT Programming Lang: Python Description : Work with GFF and GTF

Bug#834590: ITP: python3-typed-ast -- AST with PEP 484 type comments support

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python3-typed-ast Version : 0.5.5 Upstream Author : David Fisher * URL : https://pypi.python.org/pypi/typed-ast * License : Python, Apache-2.0 Programming Lang: Python, C Description

Bug#834592: ITP: hisat2 -- graph-based alignment of short nucleotide reads to many genomes

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: hisat2 Version : 2.0.4 Upstream Author : HISAT2 team * URL : https://ccb.jhu.edu/software/hisat2/index.shtml * License : GPL-3+ Programming Lang: Perl, Python, C++ Description : gr

Bug#974999: ITP: r-bioc-glmgampoi -- GNU R fit a Gamma-Poisson generalized linear model

Package: wnpp Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Subject: ITP: r-bioc-glmgampoi -- GNU R fit a Gamma-Poisson generalized linear model Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-glmgampoi Version : 1.2.0

Bug#975439: ITP: r-bioc-bluster -- Clustering Algorithms for Bioconductor

Package: wnpp Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Subject: ITP: r-bioc-bluster -- Clustering Algorithms for Bioconductor Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-bluster Version : 1.0.0 Upstream Author

Bug#975625: ITP: r-cran-profmem -- Simple Memory Profiling for R

Package: wnpp Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Subject: ITP: r-cran-profmem -- Simple Memory Profiling for R Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-profmem Version : 0.5.0 Upstream Author : Henrik

Bug#975629: ITP: r-cran-bench -- High Precision Timing of R Expressions

Package: wnpp Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Subject: ITP: r-cran-bench -- High Precision Timing of R Expressions Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-bench Version : 1.1.1 Upstream Author : Jim

Bug#981116: ITP: python-wdlparse -- Workflow Description Language (WDL) parser for Python

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-wdlparse -- Workflow Description Language (WDL) parser for Python Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-wdlparse Version : 0.1.0 Upstream Author

Bug#981866: ITP: python-stubserver -- mock tester of external web dependencies for Python

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-stubserver -- mock tester of external web dependencies for Python Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-stubserver Version : 1.1 Upstream Author

Bug#982082: ITP: r-bioc-scrnaseq -- Collection of Public Single-Cell RNA-Seq Datasets

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-bioc-scrnaseq -- Collection of Public Single-Cell RNA-Seq Datasets Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-scrnaseq Version : 2.4.0+ds Upstream Author

Bug#982142: ITP: uncalled -- Utility for Nanopore Current Alignment to Large Expanses of DNA

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: uncalled -- Utility for Nanopore Current Alignment to Large Expanses of DNA Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: uncalled Version : 2.2+ds Upstream Author : , Sam

Bug#982417: Python louvain packages naming confusion.

omatically run autodep8 which > fails because the import name is community and not louvain. > In the short term I recommend fixing this by adding a file to the Debian python-louvain package named "debian/tests/autopkgtest-pkg-python.conf" with the contents "import_name = community" -- Michael R. Crusoe

Bug#984815: ITP: libbiosoup-dev -- C++ header-only support library for bioinformatics tools

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: libbiosoup-dev -- C++ header-only support library for bioinformatics tools Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbiosoup-dev Version : 0.10.0 Upstream Author

Bug#986236: ITP: r-cran-visnetwork -- Network Visualization using 'vis.js' Library

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-cran-visnetwork -- Network Visualization using 'vis.js' Library Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-visnetwork Version : 2.0.9+ds Upstr

Bug#986237: ITP: r-cran-influencer -- Software Tools to Quantify Structural Importance of Nodes in a

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-cran-influencer -- Software Tools to Quantify Structural Importance of Nodes in a Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-influencer Version : 0.1.0

Bug#986241: ITP: r-cran-diagrammer -- Graph/Network Visualization

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-cran-diagrammer -- Graph/Network Visualization Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-diagrammer Version : 1.0.6.1+ds Upstream Author : Richard Iannone

Bug#986621: ITP: r-bioc-rcwl -- An R interface to the Common Workflow Language

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-bioc-rcwl -- An R interface to the Common Workflow Language Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-rcwl Version : 1.6.0+ds Upstream Author : Qiang Hu, * URL

Bug#924246: 12

Package: wnpp Severity: normal test

Bug#932003: ITP: mypyc -- Mypy to Python C Extension Compile

Package: wnpp Severity: wishlist Subject: ITP: mypyc -- Mypy to Python C Extension Compile Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: mypyc Version : 0.0.git.20190713T1002.833151a+ds1 Upstream Author : Copyright: © 2017-2018 Jukka Lehtosalo and

Bug#934629: ITP: seqan3 -- C++ library for the analysis of biological sequences (development)

Package: wnpp Severity: wishlist Subject: ITP: seqan3 -- C++ library for the analysis of biological sequences (development) Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: seqan3 Version : 3.0.0+ds Upstream Author : , Knut Reinert, FU Berlin * URL

Bug#939537: ITP: vg -- tools for working with genome variation graphs

Package: wnpp Severity: wishlist Subject: ITP: vg -- tools for working with genome variation graphs Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: vg Version : 1.18.0+ds Upstream Author : Copyright: © 2014 Erik Garrison * URL : https

Bug#939933: ITP: megadock -- ultra-high-performance protein-protein docking for heterogeneous supercomputers

Package: wnpp Severity: wishlist Subject: ITP: megadock -- ultra-high-performance protein-protein docking for heterogeneous supercomputers Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: megadock Version : 4.1.1 Upstream Author : Copyright: © 2014-2018

Bug#940180: ITP: libbio-searchio-hmmer-perl -- perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)

Package: wnpp Severity: wishlist Subject: ITP: libbio-searchio-hmmer-perl -- perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam) Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-searchio-hmmer-perl Version : 1.7.3 Upstream

Bug#940244: ITP: libbio-alignio-stockholm-perl -- stockholm sequence input/output stream

Package: wnpp Severity: wishlist Subject: ITP: libbio-alignio-stockholm-perl -- stockholm sequence input/output stream Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-alignio-stockholm-perl Version : 1.7.3 Upstream Author : Copyright: Peter

Bug#940248: ITP: libbio-db-biofetch-perl -- Database object interface to BioFetch retrieval

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-biofetch-perl -- Database object interface to BioFetch retrieval Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-biofetch-perl Version : 1.7.3 Upstream Author : Copyright: Lincoln Stein

Bug#940252: ITP: libbio-db-gff-perl -- Storage and retrieval of sequence annotation data

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-gff-perl -- Storage and retrieval of sequence annotation data Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-gff-perl Version : 1.7.3 Upstream Author : Copyright: (c) 2001-2003, 2005

Bug#940253: ITP: libbio-db-ace-perl -- Database object interface to ACeDB servers

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-ace-perl -- Database object interface to ACeDB servers Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-ace-perl Version : 1.7.3 Upstream Author : Copyright: Ewan Birney , Lincoln Stein

Bug#940254: ITP: libbio-db-embl-perl -- Database object interface for EMBL entry retrieval

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-embl-perl -- Database object interface for EMBL entry retrieval Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-embl-perl Version : 1.7.4 Upstream Author : Copyright: Heikki Lehvaslaiho

Bug#940255: ITP: libbio-db-seqfeature-perl -- Normalized feature for use with Bio::DB::SeqFeature::Store

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-seqfeature-perl -- Normalized feature for use with Bio::DB::SeqFeature::Store Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-seqfeature-perl Version : 1.7.3 Upstream Author : Copyright

Bug#940256: ITP: libbio-cluster-perl -- BioPerl cluster modules

Package: wnpp Severity: wishlist Subject: ITP: libbio-cluster-perl -- BioPerl cluster modules Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-cluster-perl Version : 1.7.3 Upstream Author : Copyright: Allen Day , Andrew Macgregor , David Green

Bug#940257: ITP: libbio-tools-run-remoteblast-perl -- Object for remote execution of the NCBI Blast via HTTP

Package: wnpp Severity: wishlist Subject: ITP: libbio-tools-run-remoteblast-perl -- Object for remote execution of the NCBI Blast via HTTP Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-tools-run-remoteblast-perl Version : 1.7.3 Upstream Author

Bug#940258: ITP: libbio-db-ncbihelper-perl -- collection of routines useful for queries to NCBI databases.

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-ncbihelper-perl -- collection of routines useful for queries to NCBI databases. Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-ncbihelper-perl Version : 1.7.4 Upstream Author

Bug#944785: ITP: pufferfish -- An efficient index for the colored, compacted, de Bruijn graph

Package: wnpp Severity: wishlist Subject: ITP: pufferfish -- An efficient index for the colored, compacted, de Bruijn graph Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: pufferfish Version : 1.0.0 Upstream Author : , 2016 Rob Patro, Avi Srivastava

Bug#946266: ITP: libbio-db-swissprot-perl -- Database object interface to SwissProt retrieval

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-swissprot-perl -- Database object interface to SwissProt retrieval Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-swissprot-perl Version : 1.7.3 Upstream Author : Copyright: Jason

Bug#946269: ITP: libbio-db-refseq-perl -- Database object interface for RefSeq retrieval

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-refseq-perl -- Database object interface for RefSeq retrieval Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-refseq-perl Version : 1.7.3 Upstream Author : Copyright: Heikki Lehvaslaiho

Bug#946272: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl

Package: wnpp Severity: wishlist Subject: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-procedural-perl Version : 1.7.4 Upstream Author : Copyright: Ewan

Bug#946299: ITP: simde -- Implementations of SIMD instructions for all systems

Package: wnpp Severity: wishlist Subject: ITP: simde -- Implementations of SIMD instructions for all systems Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: simde Version : 0.0.0.git.20191205.c2e740c Upstream Author : , Evan Nemerson * URL

Bug#946468: ITP: libbio-variation-perl -- BioPerl variation-related functionality

Package: wnpp Severity: wishlist Subject: ITP: libbio-variation-perl -- BioPerl variation-related functionality Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-variation-perl Version : 1.7.4 Upstream Author : Copyright: Allen Day , Heikki

Bug#946611: ITP: golang-github-abeconnelly-autoio -- Golang io functions that provide standard scanner interfaces for compressed files.

Package: wnpp Severity: wishlist Package: wnpp Severity: wishlist Owner: Michael R. Crusoe * Package name: golang-github-abeconnelly-autoio Version : 0.0~git20150803.989b7b0-1 Upstream Author : Abram Connelly * URL : https://github.com/abeconnelly/autoio * License

Bug#946638: ITP: hopscotch-map -- C++ fast hash map and hash set using hopscotch hashing

Package: wnpp Severity: wishlist Subject: ITP: hopscotch-map -- C++ fast hash map and hash set using hopscotch hashing Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: hopscotch-map Version : 2.2.1 Upstream Author : Tessil * URL : https

Bug#914928: ITP: python-typing-extensions -- Backported and Experimental Type Hints for Python

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-typing-extensions Version : 3.6.6 Upstream Author : Guido van Rossum, Jukka Lehtosalo, Lukasz Langa, Michael Lee * URL : https://github.com/python/typing/blob/master/typing_extensions/REA

Bug#915829: ITP: arcp -- (Archive and Package) URI parser and generator

Package: wnpp Severity: wishlist Subject: ITP: arcp -- (Archive and Package) URI parser and generator Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: arcp Version : 0.2.0 Upstream Author : Stian Soiland-Reyes * URL : http://arcp.readthedocs.io

Bug#915852: ITP: bagit -- Create and validate BagIt packages

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: bagit Version : 1.7.0 Upstream Author : Ed Summers * URL : https://libraryofcongress.github.io/bagit-python/ * License : CC0 Programming Lang: Python Description : Create and valid

Bug#919570: ITP: python-mypy-extensions -- Experimental type system extensions for mypy typechecker (Python 3)

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-mypy-extensions Version : 0.4.1 Upstream Author : Jukka Lehtosalo and contributors * URL : https://github.com/python/mypy_extensions/ * License : Expat Programming Lang: Python D

Bug#919681: ITP: sourmash -- tools for comparing DNA sequences with MinHash sketches

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: sourmash Version : 2.0.0~a11 Upstream Author : C. Titus Brown , Luiz C. Irber, Jr * URL : http://sourmash.readthedocs.io/en/latest/ * License : BSD-3-Clause Programming Lang: Python, C+

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