Bug#676384: ITP: libsort-key-top-perl -- select and sort top n elements

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: libsort-key-top-perl Version : 0.06 Upstream Author : Salvador Fandiño * URL : http://search.cpan.org/~salva/Sort-Key-Top-0.06/lib/Sort/Key/Top.pm * License : Perl Artistic Programming

Bug#680539: ITP: hmmer2 -- profile hidden Markov models for protein sequence analysis (version 2)

Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: hmmer2 Version : 2.3.2 Upstream Author : Sean Eddy * URL : ftp://selab.janelia.org/pub/software/hmmer/ * License : GPL-2+ Programming Lang: C

Bug#680539: ITP: hmmer2 -- profile hidden Markov models for protein sequence analysis (version 2)

mutations in DNA. HMMER is used to find homologues for protein sequences. I am not familiar with speech recognition at all... I have not heard of hmmer being used for it. Best regards, Laszlo On 06/07/12 19:43, Joachim Wiedorn wrote: > Hello, > > Laszlo Kajan wrote on 2012-07

Bug#684403: ITP: python-librcsb-core-wrapper -- library that exports C++ mmCIF accessors to Python

Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: python-librcsb-core-wrapper Version : 1.000 Upstream Author : Vladimir Guranovic * URL : http://sw-tools.rcsb.org/apps/CORE-WRAPPER/index.html

Bug#656626: ITP: hhsuite -- sensitive protein sequence searching based on HMM-HMM alignment

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: hhsuite Version : 2.0.4 Upstream Author : Johannes Soeding, Michael Remmert, Andreas Hauser , Andreas Biegert * URL : http://toolkit.genzentrum.lmu.de/sections/search * License : GPLv3

Bug#657897: ITP: blimps -- FHCRC BLocks IMProved Searcher

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: blimps Version : 3.9 Upstream Author : Jorja Henikoff * URL : ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/ * License : FHCRC NONCOMMERCIAL LICENSE <ftp://ftp.ncbi.nih.

Bug#659964: ITP: proftmb -- per-residue prediction of bacterial transmembrane beta barrels

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: proftmb Version : 1.1.7 Upstream Author : Henry Bigelow * URL : http://rostlab.org/ * License : GPL Programming Lang: C++ Description : per-residue prediction of bacterial

Bug#660272: ITP: sift -- predict if an amino acid substitution in a protein has phenotypic effect

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: sift Version : 3.0 Upstream Author : Pauline Ng * URL : http://sift-dna.org/ * License : FHCRC NONCOMMERCIAL LICENSE <ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/LICE

Bug#661111: ITP: ffindex -- simple index/database for huge amounts of small files

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: ffindex Version : 0.9.3 Upstream Author : Andreas Hauser * URL : http://pubshare.genzentrum.lmu.de/scientific_computing/software/ffindex/ * License : CC-BY-SA-3.0 Programming Lang: C

Bug#666192: ITP: librostlab -- C++ library from the Rost Lab

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: librostlab Version : 1.0.20 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : LGPL-3+ Programming Lang: C++ Description : C++ library from the Rost Lab The

Bug#666193: ITP: librostlab-blast -- very fast C++ library for parsing NCBI BLAST output

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: librostlab-blast Version : 1.0.0 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : LGPL Programming Lang: C, C++ Description : very fast C++ library for parsing

Bug#666194: ITP: librg-blast-parser-perl -- very fast NCBI BLAST parser - binding for perl

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: librg-blast-parser-perl Version : 0.02 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : Artistic Programming Lang: Perl Description : very fast NCBI BLAST

Bug#669259: ITP: dssp -- protein secondary structure assignment based on 3D structure

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: dssp Version : 2.0.4 Upstream Author : Maarten L. Hekkelman * URL : http://www.cmbi.ru.nl/dssp/ * License : Boost-1.0 Programming Lang: C++ Description : protein secondary structure

Bug#643324: ITP: profphd -- secondary structure and solvent accessibility predictor

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: profphd Version : 1.0.35 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : GPL Programming Lang: Perl Description : secondary structure and solvent

Bug#643323: ITP: profphd-utils -- profphd helper utilities convert_seq and filter_hssp

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: profphd-utils Version : 1.0.7 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : GPL Programming Lang: Fortran Description : profphd helper utilities convert_seq

Bug#643630: ITP: librg-utils-perl -- parsers and format conversion utilities used by (e.g.) profphd

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: librg-utils-perl Version : 1.0.41 Upstream Author : Burkhard Rost * URL : http://www.rostlab.org/ * License : GPL Programming Lang: Perl Description : parsers and format conversion

Bug#643669: ITP: pp-popularity-contest -- PredictProtein popularity contest

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: pp-popularity-contest Version : 1.0.3 Upstream Author : Laszlo Kajan * URL : http://www.rostlab.org/ * License : GPL Programming Lang: C++ Description : PredictProtein popularity

Bug#649995: ITP: libai-fann-perl -- Perl wrapper for the FANN library

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: libai-fann-perl Version : 0.10 Upstream Author : Salvador Fandino * URL : http://fann.sf.net/ * License : Perl Artistic License Programming Lang: C, C++, Perl Description : Perl

Bug#655336: ITP: reprof -- protein secondary structure and accessibility predictor

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: reprof Version : 1.0.0 Upstream Author : Peter Hoenigschmid * URL : http://rostlab.org/ * License : GPL Programming Lang: Perl Description : protein secondary structure and

Bug#689020: ITP: concavity -- predictor of protein ligand binding sites from 3D structure and sequence conservation

Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: concavity Version : 0.1 Upstream Author : Thomas Funkhouser , John A. Capra * URL : http://compbio.cs.princeton.edu/concavity/ * License : GPL

Bug#690058: ITP: conservation-code -- tool to score protein sequence conservation

Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: conservation-code Version : 20110309.0 Upstream Author : John A. Capra , Mona Singh * URL : http://compbio.cs.princeton.edu/conservation/ * License

Bug#641581: ITP: libzerg -- C library for parsing the output of NCBI BLAST programs

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: libzerg Version : 1.0.7 Upstream Author : Apua C.M. Paquola * URL : http://code.google.com/p/libzerg/ * License : GNU GPL v2 Programming Lang: C Description : C library for parsing

Bug#641799: ITP: libzerg-perl -- fast perl module for parsing the output of NCBI BLAST programs

Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: libzerg-perl Version : 1.0.4 Upstream Author : Apuã Paquola * URL : http://code.google.com/p/libzerg/ * License : GPL Programming Lang: Perl Description : fast perl module for

Bug#723747: ITP: libfreecontact-perl -- fast protein contact predictor - binding for Perl

Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: libfreecontact-perl Version : 0.08 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : GPL-1+ or Artistic Programming Lang

Bug#723771: ITP: python-freecontact -- fast protein contact predictor - binding for Python

Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: python-freecontact Version : 1.1 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : GPL-3+ Programming Lang: C++, Python

Bug#703256: RFH: gridengine -- Distributed resource management

Package: wnpp Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello! I am Laszlo Kajan, a member of the 'Gridengine packaging' project [1]. This project team-maintains gridengine [2], a distributed resource management system, in Debian. gridengine used to be - well, s

Bug#705537: ITP: metastudent -- predictor of Gene Ontology terms from protein sequence

Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: metastudent Version : 1.0.7 Upstream Author : Tobias Hamp * URL : https://rostlab.org/owiki/index.php/Metastudent * License : GPL-2