Your message dated Tue, 31 Jan 2017 11:00:12 +
with message-id
and subject line Bug#852004: fixed in libbio-eutilities-perl 1.75-1
has caused the Debian Bug report #852004,
regarding RFP: libbio-eutilities-perl -- bioperl interface to the Entrez
Programming Utilities (E-utilities)
to be
On Fri, Jan 27, 2017 at 12:23:22PM +, Carnë Draug wrote:
> Please upload with the current patch. We are currently fixing this
> upstream [1] but it might take a while. The reason is that while
> fixing this we noticed there is no code to reproduce the xml files
> used in the test suite (they
On 27 January 2017 at 12:03, Andreas Tille wrote:
> [dropped debian-perl list from CC]
>
> Hi Carnė,
>
> On Thu, Jan 26, 2017 at 06:12:41PM +, Carnė Draug wrote:
>> I have attached a git patch which adds a quilt patch to the repos.
>> This change inlines the DTDs in the xml files and pdebuild
[dropped debian-perl list from CC]
Hi Carnë,
On Thu, Jan 26, 2017 at 06:12:41PM +, Carnë Draug wrote:
> I have attached a git patch which adds a quilt patch to the repos.
> This change inlines the DTDs in the xml files and pdebuild now
> succeeds.
>
> If this change fixes it for debian, we c
I have attached a git patch which adds a quilt patch to the repos.
This change inlines the DTDs in the xml files and pdebuild now
succeeds.
If this change fixes it for debian, we can apply it upstream.
Carnë
From 38a2038d0da47f6ac6b853b20b2934260257381d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ca
On 23 January 2017 at 22:45, gregor herrmann wrote:
> On Mon, 23 Jan 2017 22:45:24 +0100, Andreas Tille wrote:
>
>> > The first is from a missing dependency (Bio::ASN1::EntrezGene),
>> > which is really optional (the comp test should skip that
>> > directory). The other is from XML::Simple, which
On 1/24/17, 2:03 PM, "carandr...@gmail.com on behalf of Carnë Draug"
wrote:
>>...
>> Yes, I know. I simply have forwarded the issue upstream since the RFP
>> came from upstream and I considered it more sensible if they provide
>> some means to exclude http access directly in their code.
>>
>>
On 24 January 2017 at 07:26, Andreas Tille wrote:
> Hi Gregor,
>
> On Mon, Jan 23, 2017 at 11:45:29PM +0100, gregor herrmann wrote:
>>
>> The tests fail for me as well, in a chroot with networking firewalled
>> off.
>>
>> The errors are slightly different, probably because I have http_proxy
>> set
Hi Gregor,
On Mon, Jan 23, 2017 at 11:45:29PM +0100, gregor herrmann wrote:
>
> The tests fail for me as well, in a chroot with networking firewalled
> off.
>
> The errors are slightly different, probably because I have http_proxy
> set:
>
> http error : Operation in progress
> XML::Simple call
On Mon, 23 Jan 2017 22:45:24 +0100, Andreas Tille wrote:
> > The first is from a missing dependency (Bio::ASN1::EntrezGene),
> > which is really optional (the comp test should skip that
> > directory). The other is from XML::Simple, which is unusual; I’m
> > wondering whether the underlying XML pa
wrote:
> > Hi Carnė,
> >
> > On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote:
> >> I have filled a RFP (bug # 852004) for bioperl's
Bio-EUtilities
> >> package
3 January 2017 at 12:40, Andreas Tille
> wrote:
> > Hi Carnė,
> >
> > On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote:
> >> I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities
>
f of Carnë Draug"
wrote:
On 23 January 2017 at 12:40, Andreas Tille wrote:
> Hi Carnė,
>
> On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote:
>> I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities
:
> Hi Carnė,
>
> On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote:
>> I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities
>> package [1]. Unlike Bio-Coordinate, which was split from bioperl and
>
mock setup may be better.
chris
On 1/23/17, 9:03 AM, "carandr...@gmail.com on behalf of Carnë Draug"
wrote:
On 23 January 2017 at 12:40, Andreas Tille wrote:
> Hi Carnė,
>
> On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote:
>> I have filled
On 23 January 2017 at 12:40, Andreas Tille wrote:
> Hi Carnė,
>
> On Fri, Jan 20, 2017 at 05:44:00PM +, Carnė Draug wrote:
>> I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities
>> package [1]. Unlike Bio-Coordinate, which was split from bioperl and
&
Hi Carnë,
On Fri, Jan 20, 2017 at 05:44:00PM +, Carnë Draug wrote:
> I have filled a RFP (bug # 852004) for bioperl's Bio-EUtilities
> package [1]. Unlike Bio-Coordinate, which was split from bioperl and
> was recently packaged in Debian, Bio-EUtilities development started
&
Package: wnpp
Severity: wishlist
* Package name: libbio-eutilities-perl
Version : 1.75
Upstream Author : bioperl project
* URL : https://metacpan.org/release/Bio-EUtilities
* License : Perl
Programming Lang: Perl
Description : BioPerl interface to the E
18 matches
Mail list logo
