Bug#772547: ITP: iva -- Assemble virus genomes lacking repeat sequences using Illumina read pairs

Package: wnpp Severity: wishlist Owner: Jorge Soares * Package name: iva Version : 0.10.1 Upstream Author : Martin Hunt * URL : https://github.com/sanger-pathogens/iva * License : GPL3 Programming Lang: Python Description : Assemble virus genomes

Bug#770063: ITP: kmc -- count kmers in genomic sequences

Package: wnpp Severity: wishlist Owner: Jorge Soares * Package name: kmc Version : 20 Upstream Author : Sebastian Deorowicz , Marek Kokot, Szymon Grabowski, Agnieszka Debudaj-Grabysz * URL : http://sun.aei.polsl.pl/kmc/index.html * License : GPL3

Bug#766321: ITP: fastaq -- FASTA and FASTQ file manipulation tools

Package: wnpp Severity: wishlist Owner: Jorge Soares * Package name: fastaq Version : 1.5.0 Upstream Author : Martin Hunt * URL : https://github.com/sanger-pathogens/Fastaq/ * License : GPL Programming Lang: Python Description : FASTA and FASTQ file

Bug#764232: ITP: gubbins -- Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitution

Package: wnpp Severity: wishlist Owner: Jorge Soares * Package name: gubbins Version : 0.6 Upstream Author : Andrew Page * URL : https://github.com/sanger-pathogens/gubbins * License : GPL2 Programming Lang: C, Python Description : Gubbins

Bug#735180: ITP: snp-sites -- Find snp sites from multi fasta alignment files

Package: wnpp Severity: wishlist Owner: Jorge Soares * Package name: snp-sites Version : 1.1 Upstream Author : Andrew Page https://github.com/sanger-pathogens/snp_sites * License : (GPL, MIT) Programming Lang: (C++) Description : Find snp sites from multi fasta