ther send your RFS to
debian-scie...@lists.debian.org
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On Fri, Mar 23, 2018 at 05:17:01PM +0100, Sébastien Villemot wrote:
> Unfortunately that means that dh-r will no longer be fully functional offline
> (querying the local apt cache could be a fallback, but there's no guarantee
> that it is up-to-date, even when running unstable).
Package: dh-r
Version: 20171201
X-Debbugs-CC: debia...@lists.debian.org
On Fri, Mar 23, 2018 at 05:12:09PM +0100, Andreas Tille wrote:
> On Fri, Mar 23, 2018 at 04:44:11PM +0100, Sébastien Villemot wrote:
> > Actually, I am wrong: epochs are very wrong for CRAN packages, because they
-dev libsuitesparse-doc
Architecture: source amd64 all
Version: 1:5.2.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien Villemot
Description:
libamd2- approximate minimum degree ordering library for sparse matrices
libbtf1- permutation
be required, because upstream does
not currently support that possibility.
Best,
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-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Wed, 14 Mar 2018 10:11:31 +0100
Source: libmatio
Binary: libmatio-dev libmatio4 libmatio-doc
Architecture: source
Version: 1.5.12-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien
lies that r-cran-arm is a Depends. (Closes:
> > #877433)
> >...
>
> Thanks a lot for fixing this bug for unstable.
>
> It is still present in stretch, could you also fix it there?
> Alternatively, I can fix it for stretch if you don't object.
Please go ahea
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 13 Mar 2018 10:17:26 +0100
Source: libmatio
Binary: libmatio-dev libmatio4 libmatio-doc
Architecture: source
Version: 1.5.12-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien
across packages is a necessity if we want
team-maintenance to become a reality.
Best,
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-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Thu, 08 Mar 2018 10:35:41 +0100
Source: glpk-java
Binary: libglpk-java
Architecture: source
Version: 1.12.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien Villemot
Description
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Fri, 02 Mar 2018 09:08:40 +0100
Source: glpk
Binary: libglpk40 libglpk-dev glpk-doc glpk-utils
Architecture: source
Version: 4.65-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 27 Feb 2018 11:18:37 +0100
Source: r-cran-rsdmx
Binary: r-cran-rsdmx
Architecture: source
Version: 0.5.11+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien Villemot
On Sun, Feb 25, 2018 at 07:19:04PM +0100, Antonio Valentino wrote:
> I'm looking for a sponsor for the version 3.4.2-4 of the pytables [1,2].
> The new version includes a fix for the RC bug #891023.
Uploaded, thanks for your contribution.
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-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 20 Feb 2018 17:02:44 +0100
Source: glpk
Binary: libglpk40 libglpk-dev glpk-doc glpk-utils
Architecture: source
Version: 4.65-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 20 Feb 2018 16:29:03 +0100
Source: r-cran-spam
Binary: r-cran-spam
Architecture: source
Version: 2.1-2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien Villemot
Description:
r
the policy redirects to
the new.
Best,
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Science Maintainers
Changed-By: Sébastien Villemot
Description:
libvlfeat-dev - Computer vision library focussing on visual features and
clusteri
libvlfeat-doc - Computer vision library focussing on visual features and
clusteri
libvlfeat1 - Computer vision library focussing on visual features and
Maintainers
Changed-By: Sébastien Villemot
Description:
libnlopt-dev - nonlinear optimization library -- development package
libnlopt-guile0 - nonlinear optimization library -- Guile bindings
libnlopt0 - nonlinear optimization library
octave-nlopt - nonlinear optimization library -- GNU Octave
Maintainer: Debian Science Maintainers
Changed-By: Sébastien Villemot
Description:
lhapdf-ccwrap-doc - C++ Bindings for LHAPDF - documentation
lhapdf-pdfsets-minimal - Minimal PDF Sets of LHAPDF
liblhapdf-dev - [Physics] Les Houches Accord PDF Interface - development files
liblhapdf0v5
r contribution.
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d. I'll be happy to help.
Best,
On Tue, Oct 17, 2017 at 07:21:28PM +0200, Sébastien Villemot wrote:
> On Sun, Oct 15, 2017 at 08:09:52PM +0100, D Haley wrote:
>
> > Your suggestion was correct - I was not aware of the --git-pristine-tar
> > option. I don't think
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 30 Jan 2018 18:49:07 +0100
Source: r-cran-msm
Binary: r-cran-msm
Architecture: source
Version: 1.6.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien Villemot
Description:
r
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 30 Jan 2018 18:38:45 +0100
Source: r-cran-lmertest
Binary: r-cran-lmertest
Architecture: source
Version: 2.0-36-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
Changed-By: Sébastien Villemot
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Tue, 30 Jan 2018 18:32:18 +0100
Source: r-cran-dotcall64
Binary: r-cran-dotcall64
Architecture: source
Version: 0.9-5.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
Changed-By: Sébastien
ile despite
the removal of the non-free files.
I guess you detected the free stub version of the file. Still the
debian/copyright is correct. So maybe this bug can be closed? Or do you have a
suggestion on how to better handle that case?
Best,
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⣾⠁⢠⠒⠀⣿⡁ Debian Deve
On Wed, Nov 22, 2017 at 10:39:47AM +, PICCA Frederic-Emmanuel wrote:
> I will have a look at this maybe this week-end.
>
> thanks a lot for your contributions.
Actually I just made the upload. Thanks Antonio for your work.
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16967393982B
> Uid: Philip Rinn
I gave you upload rights on the new package.
I also requested the removal of the old source package (#882401).
Best,
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signa
e several people report that this package is
currently unusable.
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ld clearly be dealt with
separately.
I hope to implement them in a future upload (the first one being easier), but I
don't have an ETA. Of course patches are also welcome.
Best,
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spontaneously.
We also need to remember to remove the old source package.
Best,
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On Sun, Nov 05, 2017 at 01:06:57PM +0100, Sébastien Villemot wrote:
> On Sun, Nov 05, 2017 at 12:26:12PM +0100, Philip Rinn wrote:
> > There are packages around outside Debian Science which
> > doesn't use r-*- as source package name.
>
> This is not true. Out of the 12
On Sun, Nov 05, 2017 at 12:26:12PM +0100, Philip Rinn wrote:
> Hi,
>
> On 05.11.2017 at 10:54, Sébastien Villemot wrote:
> > scatterplot3d is the only CRAN package maintained in Debian Science Team
> > whose
> > source package name does not begin with "r-cran&qu
ckage when making searches on source package names, and
also for consistency.
Best,
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On Thu, Oct 26, 2017 at 10:24:57AM +0200, Andreas Tille wrote:
> On Tue, Oct 24, 2017 at 02:17:26PM +0200, Sébastien Villemot wrote:
> > > (see build log[2]). My suspicion is that this is not really an error in
> > > the test suite but some problem with the autobui
lder? Could somebody
> please have a look? If not the only chance I see is to deactivate armhf
> for pandas.
pandas is uncompiled on armhf, so this is not a blocker for testing migration.
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it becomes possible to override this by passing --git-no-pristine-tar to
"gbp buildpackage", should you have a good reason for doing so).
Best,
P.S.: please don’t top-post.
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ooks like you forgot to pass the --git-pristine-tar option to gbp
buildpackage.
> Thanks, and apologies for taking up your time.
No worry, I’m happy to help.
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is no package called 'arm'
Error: package or namespace load failed for 'mi'
>
Cheers,
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-lsmeans/20170723_010229/log.gz
multcompView does not appear to be packaged in Debian, so that should be done
first, then the package should be added as a test dependency in
debian/tests/control.
Cheers,
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≥ 1.1 is out.
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rol file is wrong, you should
replace /cgit/ by /git/.
The Debian Science policy is also outdated on this issue, we should fix it.
Thanks,
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of git://)
- in d/copyright: same for the Format field (per policy 4.0.0)
- upgrading to Debhelper compat level 10 would be nice, though not strictly
needed
Best,
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Control: tags -1 = pending
Control: notforwarded -1
On Mon, Sep 18, 2017 at 01:56:23PM +0200, Sébastien Villemot wrote:
> On Thu, Sep 14, 2017 at 12:34:34PM +0200, Christian Borntraeger wrote:
> > On 09/14/2017 09:58 AM, Sébastien Villemot wrote:
> > > On Wed, Sep 13, 2017 a
Control: tags -1 upstream
Control: forwarded -1 https://github.com/xianyi/OpenBLAS/issues/1307
On Thu, Sep 14, 2017 at 12:34:34PM +0200, Christian Borntraeger wrote:
> On 09/14/2017 09:58 AM, Sébastien Villemot wrote:
> > On Wed, Sep 13, 2017 at 08:33:08PM +, PICCA Frederic-Emman
ons ?
I leave that to the s390 porters to answer.
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s://www.debian.org/releases/stable/s390x/ch02s01.html.en#idm45373715987328
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ually useless, because they provide the same C interface to BLAS than the
other BLAS implementations (libblas3, libatlas3-base, libopenblas-base), but
in a less optimized way;
- or making the two packages conflict.
Andreas (and others), what do you think?
Best,
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On Sat, Sep 09, 2017 at 09:11:46PM +0200, Sébastien Villemot wrote:
> - completely dropping libcblas3 (and libcblas-dev). These two packages are
> actually useless, because they provide the same C interface to BLAS than the
> other BLAS implementations (libblas3, libatlas3-base, li
files without declaring a
> > Breaks+Replaces relation.
>
> I have just uploaded a 3-day NMU to fix this; this package is causing
> problems in testing with the libgsl transition.
Thanks, I am about to upload your patch, along with a few other bugfixes.
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and seems to work
with any BLAS/LAPACK implementation (see [1] for more details on BLAS/LAPACK
in Debian).
Cheers,
[1] https://wiki.debian.org/DebianScience/LinearAlgebraLibraries
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e other test programs (the non threaded ones) and also
> "xsl3blastst_pt". Consider me at hand for any future "work" you may need from
> me.
I tried to replicate your problem with a recent version of the ATLAS package,
and the program that you mentioned compiled fine.
Is this still
out.
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eat. Note that the manpages are going to move into liblapack-doc
(formerly they were in liblapack-doc-man, I am merging the two packages
now that both of them are going to be smaller).
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symlinks serve a
purpose: they correspond to the functions in the API of lapack, so that
one can do "man funcname" on all of them (several functions are
documented by the same manpage, hence the need for symlinks).
I think this is a reasonable compromise, and I hope this is ok with you
(bu
tives system).
Then we will do a simultaneous upload of the 3 packages, first to
experimental.
Cheers,
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ts
> discussed earlier in the bugreport. I haven't tested julia or this
> specific test yet though.
>
> https://github.com/xianyi/OpenBLAS/pull/1178
Thanks a lot James. I am going to test it on the Debian package and
apply it if it fixes the issue with julia.
Package: src:atlas
Severity: wishlist
Everything is in the subject…
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discussion in
https://lists.debian.org/debian-science/2017/02/msg00047.html).
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discussion in
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kage (unfortunately there is no debug package for OpenBLAS
in Debian jessie). Then run octave from gdb, and get a backtrace. See
https://wiki.debian.org/HowToGetABacktrace for more details (note: the
part on automatic debug packages only applies to Debian unstable, not to
Debian jessie)
Best,
5280
Cheers,
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Package: src:freefem++
Version: 3.46+dfsg1-2
Severity: serious
Dear Maintainer,
freefem++ FTBFS on most release arches (only armel was successful on build
daemons).
The build timeouts during the testsuite.
I have a similar issue on a local amd64 chroot.
Best,
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zeros and spaces.
The library consists of efficient conversion routines that have been
extracted from the V8 JavaScript engine. The code has been refactored
and improved so that it can be used more easily in other projects.
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: :' :D
Le samedi 16 janvier 2016 à 19:24 +0100, Matthias Klose a écrit :
> On 16.01.2016 18:00, Sébastien Villemot wrote:
> > I was aware of the failure but decided to nevertheless add that
> > testsuite as an autopkgtest, in order to make the test failures
> more visible.
>
&g
I could make the autopkgtest more verbose by printing the test summary.
But that summary can be seen anyways in the build log (since the testsuite is
also run at build time).
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Le lundi 14 décembre 2015 à 11:47 +0100, Rafael Laboissiere a écrit :
> I updated the xmds2 package in Git (commit 479917b) for using libgsl-dev
> instead of libgsl0-dev. Please, upload it to unstable.
Thanks. Uploaded.
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as wontfix.
Ack. Thanks for your feedback.
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Package: wnpp
Severity: wishlist
Owner: "Sébastien Villemot"
X-Debbugs-CC: debian-science-maintainers@lists.alioth.debian.org
* Package name: r-cran-xlconnect
Version : 0.2.11
Upstream Author : Martin Studer
* URL : https://cran.r-project.org/web/packages
Control: tags -1 + upstream
Control: forwarded -1 http://icl.cs.utk.edu/lapack-forum/viewtopic.php?t=4808
Dear Madlene,
Le samedi 03 octobre 2015 à 11:45 +0200, Sébastien Villemot a écrit :
> Le lundi 05 janvier 2015 à 17:48 +0100, Madlene Nussbaum a écrit :
> > Some computations in
-error4.RData)
.
Could you possibly send me the RData file by e-mail?
Best,
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pt
- from the octave prompt, trigger the crash. You should be given back a
gdb prompt
- type "backtrace" at the gdb prompt, and send the output to this
bugreport
Thanks,
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Control: tags -1 + patch
Le samedi 26 septembre 2015 à 21:45 +0200, Sébastien Villemot a écrit :
> On Mon, 27 Jul 2015 10:55:40 +0200 Sébastien Villemot wrote:
> > Package: src:yade
> > Version: 1.14.0-5
>
> > Your package fails to build against suitesparse 4.4, w
s file created in debian/rules, as
mentionned by kibi. This looks very ugly. Is this hack really necessary?
Cheers,
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Control: clone -1 -2
Control: reassign -2 libeigen3-dev 3.2.5-4
Control: found -2 3.3~alpha1-1~exp2
Control: retitle -2 CholmodSupport.h uses UF_long which has been removed in
SuiteSparse 4.4
On Mon, 27 Jul 2015 10:55:40 +0200 Sébastien Villemot wrote:
> Package: src:yade
> Version: 1.
Le samedi 26 septembre 2015 à 12:00 -0700, Dima Kogan a écrit :
> Sébastien Villemot writes:
>
> > Is there any good reason why you uploaded the fixed package to
> > experimental instead of unstable?
> >
> > Is it ok for you if I do the upload to unstable (as me
Debian Science Team) when the suitesparse transition starts?
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en the transition
begins.
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-> Copying COW directory
forking: rm -rf /var/cache/pbuilder/build//cow.7321
forking: cp -al /var/cache/pbuilder/ba
larly suspect that that's the
> cause of the failure but it's another sign of the build being
> non-deterministic.
Yes, the build system of atlas is just a nightmare.
Tagging as unreproducible for the time being.
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Control: severity -1 important
Dear Martin and Edmund,
Le mercredi 01 juillet 2015 à 21:36 -0400, Martin Michlmayr a écrit :
> * Sébastien Villemot [2015-05-01 12:39]:
> > > make[3]: Entering directory '/«PKGBUILDDIR»/build/atlas-base/lib'
> > > mkdir tmp
>
rting
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debian-science-maintaine
n you please provide me with the full build log? On which machine did
you try the compilation?
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Config.cmake includes a file called
double-conversionLibraryDepends.cmake. This file does not exist in the
source tarball, and is generated by cmake at build time. So it seems
that cmake has to be used as a build system, or alternatively that this
file has to be generated by hand.
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.''`.Sébastie
CPU detection goes wrong.
I know that CPU detection does not always work very well in VMs (see
#743490 for an example). Did your crash occur on real 586 hardware, or
in a VM?
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e; the
library does not change very often and has few reverse dependencies.
Cheers,
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a wishlist bug against the
science-neuroscience-cognitive package. See
https://www.debian.org/Bugs/Reporting for details about the bug
reporting procedure.
Cheers,
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`-
Thanks for your patch. I'm ok to upload this to sid, but I'd prefer to
have the Release Team acknowledgement beforehand. Could you please take
care of that?
Cheers,
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t src:coinor-symphony). Otherwise your request will
probably go unnoticed by the maintainer (whom I've put in CC) or will be
forgotten.
Bug reporting instructions are there:
https://www.debian.org/Bugs/Reporting
Best,
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probably in that direction that the root of the problem
should be looked for.
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debian-
3.10.2-4
currently in testing. Some change in the build dependencies or in the build
environment revealed it.
I'll upload a fix soon.
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s BLAS
implementations. See #760936 for some discussion about this issue. If
you have suggestions about the right way of converting those packages to
multiarch, they are of course welcome.
Cheers,
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em compiles fine but then all its test cases
> fail. But when I try it on harris.d.o (or asachi.d.o), I cannot
> reproduce any problem.
I have the same issue for octave (see #760271). Raising to severity
serious and adding blocked bugs.
Thanks for investigating this issue.
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.''`.
epends
> of atlas to avoid this problem.
This report is a duplicate of #628104, #697431 and #731960. Closing
accordingly.
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Des
Le 2014-11-03 13:25, Mauricio Faria de Oliveira a écrit :
Hi Sébastien,
On 10/28/2014 05:14 PM, Sébastien Villemot wrote:
Thanks Mauricio for your work. It looks much better now, and I will
definitely ask the Release Team for getting this into Jessie (probably
in a few days though).
Sorry
ny comments on the v2 debdiff, and about
> talking to the Release Team for authorizing an upload?
Thanks Mauricio for your work. It looks much better now, and I will
definitely ask the Release Team for getting this into Jessie (probably
in a few days though).
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.'&#
-day
migration delay). However, we may obtain the permission of the Release
Team to upload this patch to jessie; simplifying this patch as much as
possible will increase the possibility of having this happening.
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