Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
Dear release-team,
I am seeking pre-approval to upload openbabel/3.1.1+dfsg-6.
[ Reason ]
In many places of openbabel/3.1.1+dfsg-5 version string of '3.1.0' is
stored instead of the correc
Control: tags -1 - moreinfo
Hi Graham,
On 2021-06-10 15:55, Graham Inggs wrote:
> On Thu, 10 Jun 2021 at 13:45, Andrius Merkys wrote:
>> I am seeking pre-approval to upload openbabel/3.1.1+dfsg-6.
>
> Please go ahead and upoad to unstable, then remove the moreinfo tag.
T
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new packages, as
they cannot be migrated to testing due to missing builds on buildd.
nmu gemmi_0.4.5+ds-1 . amd64 . unstable
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for schroedinger-coordgenlibs
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is fine, ratt successfully rebuilds
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I accidentally uploaded *_amd64.changes instead of *_source.changes.
Thus I need a binNMU on amd64 to unblock migration.
nmu libsyntax-keyword-try-perl_0.24-1 . amd64 . unstable .
@@
+sweethome3d (6.4.2+dfsg-2) unstable; urgency=medium
+
+ * Team upload.
+ * Locating freehep-graphicsbase (Closes: #985604)
+
+ -- Andrius Merkys Mon, 22 Mar 2021 05:44:09 -0400
+
sweethome3d (6.4.2+dfsg-1) unstable; urgency=medium
* New upstream version 6.4.2+dfsg.
diff -Nru sweethome3d-6.4.2+dfsg
Control: tags -1 - moreinfo
On 2021-03-22 21:26, Sebastian Ramacher wrote:
> Control: tags -1 confirmed moreinfo
>
> On 2021-03-22 12:03:55 +0200, Andrius Merkys wrote:
>> Package: release.debian.org
>> Severity: normal
>> User: release.debian@packages.debi
(2.0.0a1+dfsg-4) unstable; urgency=medium
+
+ * Applying upstream changes as a patch to fix FTBFS with Python 3.9
+(Closes: #975215)
+
+ -- Andrius Merkys Wed, 03 Mar 2021 06:29:19 -0500
+
cif2cell (2.0.0a1+dfsg-3) unstable; urgency=medium
* Making build reproducible (Closes: #970024
On 2021-03-25 22:05, Ivo De Decker wrote:
> On Tue, Mar 23, 2021 at 02:48:01PM +0200, Andrius Merkys wrote:
>> I am seeking unblocking of cif2cell/2.0.0a1+dfsg-4.
> The deadline for packages that are not testing has passed. Sorry.
I see. Thank you for information, and sorry for the
=medium
+
+ * Applying upstream commit 6b8267f0bbc87d877bce87bfd28d4538c3f95ee5 as
+a patch fixing detection of aromatic bonds.
+
+ -- Andrius Merkys Tue, 30 Mar 2021 07:23:23 -0400
+
libchemistry-opensmiles-perl (0.4.3-1) unstable; urgency=medium
* New upstream version 0.4.3
diff -Nru
Control: tags -1 - moreinfo
On 2021-04-01 13:43, Sebastian Ramacher wrote:
> ACK, please remove the moreinfo tag once the version is available in
> unstable.
Thanks! Uploaded to unstable.
Best,
Andrius
-04-27 11:23:46.0 -0400
@@ -1,3 +1,10 @@
+mkdepend (0.0~svn45-3) unstable; urgency=medium
+
+ * Build-depend on docbook-xsl to remove the need to download the stylesheet
+using network (Closes: #987673).
+
+ -- Andrius Merkys Tue, 27 Apr 2021 11:23:46 -0400
+
mkdepend (0.0~svn45-2
On 2021-04-27 21:50, Sebastian Ramacher wrote:
> On 2021-04-27 18:44:24 +0300, Andrius Merkys wrote:
>> Package: release.debian.org
>> Severity: normal
>> User: release.debian@packages.debian.org
>> Usertags: unblock
>>
>> Dear release-team,
>>
&g
:45.0
-0400
@@ -1,3 +1,9 @@
+cod-tools (3.1.0+dfsg-3) unstable; urgency=medium
+
+ * Patching buffer overflow in code responsible for composing error messages.
+
+ -- Andrius Merkys Wed, 12 May 2021 06:21:45 -0400
+
cod-tools (3.1.0+dfsg-2) unstable; urgency=medium
* Adding missing Breaks
Control: tags -1 - moreinfo
On 2021-05-13 12:38, Sebastian Ramacher wrote:
> ACK, please remove the moreinfo tag once the new version is available in
> unstable.
Thanks, uploaded.
Best,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new package, as
they cannot be migrated to testing due to missing builds on buildd.
nmu inchi_1.03+dfsg-4 . amd64 . unstable
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for schroedinger-coordgenlibs
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is fine, ratt successfully rebuilds
Hi Sebastian,
On 2021-09-28 00:40, Sebastian Ramacher wrote:
> Please go ahead
Thanks! By the way, did you intend to close the transition bug? AFAIR,
such bugs were kept open until the completion of transitions before.
Best,
Andrius
Hi Sebastian,
On 2021-09-28 19:27, Sebastian Ramacher wrote:
> On 2021-09-28 08:12:11, Andrius Merkys wrote:
>> By the way, did you intend to close the transition bug? AFAIR,
>> such bugs were kept open until the completion of transitions before.
> This was a mistake. In any
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for openmm
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is OK, all reverse dependencies build fine.
Thanks,
An
ort handling in
+Python 3.8. The patch fixing #937262 has changed the way relative imports
+are called, but the used construction does not work since Python 3.8.
+Undoing changes in the patch fixed the ImportError in propka.
+
+ -- Andrius Merkys Wed, 16 Feb 2022 02:13:35 -0500
+
pdb2
On 2022-02-19 19:52, Adam D. Barratt wrote:
> Please go ahead.
Thanks, uploaded.
Best wishes,
Andrius
Hello,
On Mon, 14 Mar 2022 02:30:08 +0100 Matthias Klose wrote:
> this breaks everything immediately because of the conflicting libtbb2 and
> libtbb12. Please fix this first.
This has been fixed recently with tbb/2020.3-2 and onetbb/2021.5.0-8
uploads.
Best,
Andrius
Hello,
On Wed, 1 Jun 2022 20:29:02 +0200 Graham Inggs
wrote:> I noticed some packages in the tracker not appearing in your list;
> e.g. openimageio, pcl and yade. These packages have transitive
> build-dependencies on libtbb-dev through e.g. libopenvdb-dev or
> libvtk9-dev, and should be investi
Hi Graham,
On 2022-06-03 17:14, Graham Inggs wrote:
> Unrelated FTBFS
> ===
>
> freeture - not in testing
> gmsh - https://tests.reproducible-builds.org/debian/rb-pkg/gmsh.html
> kicad - https://tests.reproducible-builds.org/debian/rb-pkg/kicad.html
> limereg - not in testing
> madnes
Hi,
On 2022-06-12 10:29, Graham Inggs wrote:
> Please go ahead with the upload of onetbb to unstable.
Uploaded. Thanks for the guidance!
Best wishes,
Andrius
Hi Mo,
On 2022-06-13 18:54, M. Zhou wrote:
> Thank you so much for the help! I was still looking for time slot
> to login into a build server to deal with this hard-to-build package.
Thank you for updating the onetbb package! Building and uploading it was
not that much of a work. Admittedly, ratt
Hi,
On 2022-06-14 13:05, Graham Inggs wrote:
> I've noticed some binNMUs failed on armel; mathicgb [1] (subsequently
> fixed by maintainer upload) and r-cran-rcppparallel [2]. Both seem to
> fail in a similar way:
>
> /usr/bin/ld:
> /usr/lib/gcc/arm-linux-gnueabi/11/../../../arm-linux-gnueabi/l
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new package.
nmu liboqs_0.7.2~rc1-1 . amd64 . unstable . -m "Rebuild on buildd"
Thanks,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new package.
nmu osra_2.1.3-2 . amd64 . unstable . -m "Rebuild on buildd"
Thanks,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new packages.
nmu libtrexio_2.2.3-2 . amd64 . unstable . -m "Rebuild on buildd"
nmu parmed_3.4.3+dfsg-1 . amd64 . unstable
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU to support python3.11.
nmu spglib_2.0.2-1 . ANY . unstable . -m "Add python3.11"
Thanks,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new package.
nmu libmcfp_1.2.2-1 . amd64 . unstable . -m "Rebuild on buildd"
Thanks,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for simbody
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is OK. All reverse dependencies currently are not in
; urgency=medium
+
+ * Build depends on docbook-xsl (Closes: #1027828)
+
+ -- Andrius Merkys Wed, 04 Jan 2023 07:13:05 -0500
+
macromoleculebuilder (3.2+dfsg-2) unstable; urgency=medium
* Adding missing build dependency on docbook-xml.
diff -Nru macromoleculebuilder-3.2+dfsg/debian/control
On 2023-01-06 15:18, Adam D. Barratt wrote:
Hmmm. How did it manage to build initially, then?
https://buildd.debian.org/status/fetch.php?pkg=macromoleculebuilder&arch=amd64&ver=3.2%2Bdfsg-2&stamp=1608131113&raw=0
appears to be the version in bullseye currently, and only mentions
docbook-xsl on
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new package.
nmu c2x_2.34d-1 . amd64 . unstable . -m "Rebuild on buildd"
Thanks,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for a package recently passed through NEW.
nmu rdkit_202003.4-3 . amd64 . unstable . -m "Rebuild on buildd"
Thanks,
Andrius
Hi Graham,
On 2020-11-02 08:04, Graham Inggs wrote:
> rdkit has an arch:all package, so it will need a source-only upload.
Indeed, I overlooked that again, sorry.
Best wishes,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new package.
nmu libcifpp_1.0.0-1 . amd64 . unstable . -m "Rebuild on buildd"
Thanks,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new package.
nmu antlr4-cpp-runtime_4.9+dfsg-1 . amd64 . unstable . -m "Rebuild on buildd"
Thanks,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new package.
nmu libnewuoa_0.1.1-1 . amd64 . unstable . -m "Rebuild on buildd"
Thanks,
Andrius
Hello,
schroedinger-maeparser transition seems to be complete. All related
packages had been rebuilt, and have already migrated to testing. I suppose
transition bug can now be closed.
Best,
Andrius
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for recently accepted new packages, as
they are not migrated to testing due to missing builds on buildd.
nmu wannier90_3.1.0+ds-2 . amd64 . unstab
Hi Sebastian,
On Thu, 16 Jul 2020, 11:36 Sebastian Ramacher, wrote:
> Scheduled the binNMU for opennmm.
>
Thanks a lot!
wannier90, node-extract-zip and macromoleculebuilder need source-only
> uploads. We cannot binNMU arch: all packages.
>
Thank you for explanation. I will upload source-only
1-1~exp2), ssm (1.4-1~exp2).
This is my first transition, therefore please let me know should there be any
issues.
Thanks,
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
On 05/03/2018 08:59 AM, Emilio Pozuelo Monfort wrote:
> Please go ahead.
Thank you.
> Are you going to upload the rdeps from experimental to unstable as well?
Yes.
Best,
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 V
architectures. What would be the next steps towards the completion of this
transition?
Best,
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
Thanks for information.
Best,
Andrius
On 05/10/2018 09:19 AM, Emilio Pozuelo Monfort wrote:
> There's nothing to do at this moment, just waiting for mmdb to be old enough
> so
> that britney attempts to migrate it to testing. That should happen in ~16
> hours.
--
Andri
Hello,
am I right to assume that the transition is complete? New version of the
package is in unstable and the tracker
(https://release.debian.org/transitions/html/auto-mmdb.html) is already dead.
If so, the transition bug can be closed.
Best,
Andrius
--
Andrius Merkys
Vilnius University
lot would
help a lot to track the progress
of the transition.
Thanks,
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
kages in [1] against the new version of libopenbabel. All seem to build
successfully except mpqc3, which FTBFS on x86_64 unstable no matter which
libopenbabel version I use.
Thanks,
Andrius
[1] https://release.debian.org/transitions/html/auto-openbabel.html
--
Andrius Merkys
Vilnius University I
On 06/20/2018 07:40 PM, Emilio Pozuelo Monfort wrote:
> mpqc3 is not in testing so no big deal. Go ahead then.
Thanks!
Best,
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
Hello,
the transition has been completed for some time now. I suppose this bug
could be closed.
Best,
Andrius
000 -0400
+++ osra-2.1.3/debian/changelog 2023-05-04 02:31:03.0 -0400
@@ -1,3 +1,9 @@
+osra (2.1.3-3) unstable; urgency=medium
+
+ * libosra-dev: add dependency on libosra2 (Closes: #1035455)
+
+ -- Andrius Merkys Thu, 04 May 2023 02:31:03 -0400
+
osra (2.1.3-2) unstable; urgency=med
+++ openstructure-2.3.1/debian/changelog2023-05-24 00:56:53.0
-0400
@@ -1,3 +1,10 @@
+openstructure (2.3.1-9) unstable; urgency=medium
+
+ * libost-base2.3: Add Breaks: libost-base2.2 for smoother upgrades from
+bullseye. (Closes: #1036639)
+
+ -- Andrius Merkys Wed, 24 May 2023
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for openmm
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is OK.
Status of reverse dependencies:
- cpptraj: no
Hello,
On 2023-06-25 21:15, Sebastian Ramacher wrote:
python-pdbfixer seems to need a sourceful upload due to the
python3-simtk => python3-openmm rename.
Sourceful upload does not seem to help: somewhy python3-pdbfixer picks
dependency on python3-simtk instead of python3-openmm. I guess this
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for openstructure
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is OK.
openstructure has a single reverse depe
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
pytorch has underwent a soname bump without a transition [1]. Thus I
would like to request rebuild of its reverse dependencies I maintain:
nmu pytorch-scatter_2.1.0-2 . ANY . un
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on amd64 for packages recently accepted to
experimental.
nmu openstructure_2.6.0~rc-1~exp . amd64 . experimental . -m "Rebuild
on buildd"
nmu spglib
Hi,
On 2023-11-09 15:57, Sebastian Ramacher wrote:
We can of course schedule the binNMUs, but I am wondering why are those
required?
I wanted to check whether they rebuild successfully on buildd. I have
not done this before, just wanted to be extra careful this time. But of
course I may as w
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for spglib
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is OK. Rebuild results for reverse dependencies:
* av
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
X-Debbugs-Cc: cru...@debian.org
Hello,
I would like to request a transition slot for spdlog (experimental ->
unstable) due to soname bump. Ben tracker was not set up automatically,
th
On Thu, 16 Nov 2023 18:01:01 +0200 Andrius Merkys wrote:
* kodi (seems to be affected by spdlog API change)
Sorry, kodi builds fine, it should not be here, my mistake.
Best,
Andrius
On 2023-11-17 08:42, Sebastian Ramacher wrote:
I suspect that's due to the use of libspdlogX-fmtY. I've added a manual
tracker and added the fmt postfix.
Right, this might be the reason. Thanks!
Andrius
Hi Sebastian,
On 2023-11-18 14:36, Sebastian Ramacher wrote:
spdlog's autopkgtest fail, though:
https://ci.debian.net/data/autopkgtest/testing/amd64/s/spdlog/39983394/log.gz Could you please take a look?
Apparently spdlog needs catch2 >= 3.0.0. I have just added the versioned
depends and uplo
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on packages which are affected by libccp4
soname change due to time_t64 transition:
nmu cctbx_2023.12+ds2+~3.17.0+ds1-4 . ANY . unstable . -m "Rebuild
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for inchi
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is OK. Rebuild results for reverse dependencies:
* jni
Hi,
inchi has migrated to testing and all its binary reverse dependencies
seem to have switched from libinchi1 to libinchi1.07. However,
transition tracker [1] shows the reverse dependencies as partially
migrated - what could be the issue with them?
Andrius
[1] https://release.debian.org/tr
Hi Sebastian,
On 2024-09-08 22:10, Sebastian Ramacher wrote:
On 2024-09-08 14:21:57 +0300, Andrius Merkys wrote:
inchi has migrated to testing and all its binary reverse dependencies seem
to have switched from libinchi1 to libinchi1.07. However, transition tracker
[1] shows the reverse
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for openmm
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is OK.
All reverse dependencies rebuild fine, except
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
Hello,
I would like to request a transition slot for openstructure
(experimental -> unstable) due to soname bump. Current ben tracker [1]
is OK.
openstructure has a single reverse depe
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hello,
I want to request binNMU on riscv64 to update its binary dependency on
libboost-python1.83.0-py312 with libboost-python1.83.0-py313:
nmu coot_1.1.09+dfsg-4 . riscv64 . unstable
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