Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Jorge Sebastião Soares
Forgot to CC debian python: -- Forwarded message -- From: Jorge Sebastião Soares Date: Mon, Nov 24, 2014 at 11:31 AM Subject: Re: [iva] - Python 3 code depends on pysam To: Debian Med Project List Hi Bary, all On Fri, Nov 21, 2014 at 7:29 PM, Barry Warsaw wrote: > On Nov

Re: Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Piotr Ożarowski
[Jorge Sebastião Soares, 2014-11-24] > [1] - http://anonscm.debian.org/cgit/debian-med/iva.git/tree/debian/rules just a quick look: * invoking dh_python3 before dh_auto_build doesn't make sense, remove this line * you'd not need "rm -rf build .pybuild" line if you re-enable dh_auto_clean -- P

Re: Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Jorge Sebastião Soares
Hi Piotr, Thanks for having a look. On Mon, Nov 24, 2014 at 11:57 AM, Piotr Ożarowski wrote: > [Jorge Sebastião Soares, 2014-11-24] > > [1] - > http://anonscm.debian.org/cgit/debian-med/iva.git/tree/debian/rules > > just a quick look: > * invoking dh_python3 before dh_auto_build doesn't make s

Re: Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Piotr Ożarowski
[Jorge Sebastião Soares, 2014-11-24] > > http://anonscm.debian.org/cgit/debian-med/iva.git/tree/debian/rules > > > > just a quick look: > > * invoking dh_python3 before dh_auto_build doesn't make sense, remove this > > line > > > > So I just let dh_auto_build cal dh_python3 automatically? dh_au

Re: Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Jorge Sebastião Soares
Piotr, On Mon, Nov 24, 2014 at 12:26 PM, Piotr Ożarowski wrote: > [Jorge Sebastião Soares, 2014-11-24] > > > http://anonscm.debian.org/cgit/debian-med/iva.git/tree/debian/rules > > > > > > just a quick look: > > > * invoking dh_python3 before dh_auto_build doesn't make sense, remove > this > > >

Re: Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Jorge Sebastião Soares
Hi guys, So essentially the package build halts when it tries to run the test suite: This is the error I'm getting when the pysam module is being imported: root@debian:~/iva-0.10.0# python3.4 setup.py test running test running egg_info writing top-level names to iva.egg-info/top_level.txt writin

Re: Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Jorge Sebastião Soares
Hi Ghis On Mon, Nov 24, 2014 at 4:58 PM, Ghislain Vaillant wrote: > At worst, can't you just disable the test suite for the Python 3 builds ? > Pybuild should allow to do that easily. > Trying that now. But I would still need to link pysam to the iva package at some point, no? Regards, Jorge

Re: Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Ghislain Vaillant
At worst, can't you just disable the test suite for the Python 3 builds ? Pybuild should allow to do that easily. Ghis 2014-11-24 16:36 GMT+00:00 Jorge Sebastião Soares : > Hi guys, > > So essentially the package build halts when it tries to run the test suite: > > This is the error I'm getting

Re: Fwd: [iva] - Python 3 code depends on pysam

2014-11-24 Thread Jorge Sebastião Soares
Hi Ghis, Disabling the tests worked. The package builds at least, but not lintian clean . I'll cary on tomorrow. Regards, Jorge On Mon, Nov 24, 2014 at 5:02 PM, Jorge Sebastião Soares < j.s.soa...@gmail.com> wrote: > Hi Ghis > > On Mon, Nov 24, 2014 at 4:58 PM, Ghislain Vaillant > wrote: >