Re: trouble with snakemake having glpk-utils installed

2021-03-23 Thread patrice . duroux
Hi, I found that it is python3-pulp that calls glpsol provided by glpk- utils: https://sources.debian.org/src/python-pulp/1.6.0+dfsg1-5/src/pulp/solvers.py/?hl=100#L100 It's strange that the python3-pulp package didn't at least suggest some of these tools because tracking my issue using apt rde

trouble with snakemake having glpk-utils installed

2021-03-22 Thread Patrice Duroux
Hi, With a very simple Snakefile test case like this: rule test: shell: 'echo "Hello world!"' here is the output got with glpk-utils installed (sagemath requires it on this system): $ snakemake -j1 Building DAG of jobs... Using shell: /bin/bash Provided cores: 1 (use --cores to def