I ended up doing something similar to catch any future
problematic characters:
https://github.com/biopython/biopython/pull/1607
Peter
On Fri, Apr 6, 2018 at 10:36 AM, Peter Cock wrote:
> Thanks Andreas,
>
> Piotr, I think your fix would be worth including in Biopython.
>
> Do you want to submi
[Peter Cock, 2018-04-06]
> Piotr, I think your fix would be worth including in Biopython.
>
> Do you want to submit this as a pull request, or give me
> permission to do so by email?
go ahead
> We'd need you to agree to both the Biopython License Agreement
> and the 3-clause BSD licence, and say
Thanks Andreas,
Piotr, I think your fix would be worth including in Biopython.
Do you want to submit this as a pull request, or give me
permission to do so by email?
We'd need you to agree to both the Biopython License Agreement
and the 3-clause BSD licence, and say if you'd like to be
acknowled
Hi Peter,
On Thu, Apr 05, 2018 at 04:19:50PM +0100, Peter Cock wrote:
>
> https://github.com/biopython/biopython/commit/6421d365a511c0de71748737ba6e1cd8518658ac
>
> Can you pull in that commit as a patch for the Biopython 1.71 package?
Thanks. I'm using this as patch. I can confirm that this
Confirmed - not sure if my earlier email made it?
https://github.com/biopython/biopython/commit/6421d365a511c0de71748737ba6e1cd8518658ac
Can you pull in that commit as a patch for the Biopython 1.71 package?
Peter
On Thu, Apr 5, 2018 at 3:39 PM, Klaus Zimmermann
wrote:
> Hi Andreas,
>
> here,
On 04/05/2018 04:34 PM, Andreas Tille wrote:
> Hi Olivier,
>
> On Thu, Apr 05, 2018 at 04:19:37PM +0200, Olivier Sallou wrote:
>> On 04/05/2018 04:10 PM, Andreas Tille wrote:
>>> (maybe?) setup.py:
>>>
>>>
>>> ...
>>> dh_auto_clean
>>> pybuild --clean -i python{version} -p 2.7
>>> I: pybu
Hi Andreas,
here, the culprit is
U+2019 : RIGHT SINGLE QUOTATION MARK {single comma quotation mark}
that is used as an apostrophe in two places in "Apple's".
I found this by looking for 0xe2 (from your error message) in an hexdump
(od -A d -xc README.rst |less ) at the named position (7116).
Che
[Andreas Tille, 2018-04-05]
> Traceback (most recent call last):
> File "setup.py", line 435, in
> readme_rst = handle.read()
> File "/usr/lib/python3.6/encodings/ascii.py", line 26, in decode
> return codecs.ascii_decode(input, self.errors)[0]
> UnicodeDecodeError: 'ascii' codec can't
Hi Olivier,
On Thu, Apr 05, 2018 at 04:19:37PM +0200, Olivier Sallou wrote:
>
> On 04/05/2018 04:10 PM, Andreas Tille wrote:
> > (maybe?) setup.py:
> >
> >
> > ...
> > dh_auto_clean
> > pybuild --clean -i python{version} -p 2.7
> > I: pybuild base:217: python2.7 setup.py clean
> > runnin
Hi,
I imported BioPython version 1.71 into the packaging Git[1] and tried to
build it. Unfortunately I'm stumbling upon some encoding problem in
(maybe?) setup.py:
...
dh_auto_clean
pybuild --clean -i python{version} -p 2.7
I: pybuild base:217: python2.7 setup.py clean
running clean
re
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