On Mon, Apr 30, 2018 at 08:29:13PM +0200, Piotr Ożarowski wrote:
> [Andreas Tille, 2018-04-30]
> > Hmmm, inside pbuilder chroot the files are installed to
> >
> > /build/snakemake-4.8.0/.pybuild/cpython3_3.6_snakemake/build/bin/snakemake
> >
> > while
> >
> > # pybuild --print build_dir --in
[Andreas Tille, 2018-04-30]
> On Mon, Apr 30, 2018 at 03:57:51PM +0200, Piotr Ożarowski wrote:
> > [Andreas Tille, 2018-04-30]
> > > > PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) ...
> > > I tried the same trick for snakemake in Git[1] but failed.
> > >
> > > Am I missing
On Mon, Apr 30, 2018 at 03:57:51PM +0200, Piotr Ożarowski wrote:
> [Andreas Tille, 2018-04-30]
> > > PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) ...
> > I tried the same trick for snakemake in Git[1] but failed.
> >
> > Am I missing something?
>
> you changed PYTHONPATH,
[Andreas Tille, 2018-04-30]
> > PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) ...
>
> This worked nicely for python-skbio.
>
> > I fixed few packages already, here's a list of other affected ones:
> > ...
> > snakemake Debian Med Packaging Team
>
> I tried the same
Hi Piotr,
On Thu, Apr 26, 2018 at 12:01:17PM +0200, Piotr Ożarowski wrote:
> [Andreas Tille, 2018-04-26]
> >ModuleNotFoundError: No module named 'skbio'
>
> that's because I had to change pybuild's internal paths (to make it work
> with multiple modules/packages at the same time).
>
> I adde
[Andreas Tille, 2018-04-26]
> some packages I maintain received this kind of bug in the case of
> python-skbio it is
>
>ModuleNotFoundError: No module named 'skbio'
>
> So the module that was just build is not found. I guess this is due to
> some misuse of pybuild - but what did I wrong? Py
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