Re: Help for Python mock test suite needed

2016-08-17 Thread Barry Warsaw
On Aug 17, 2016, at 01:58 PM, Andreas Tille wrote: >This exactly was my question: Is there any advise how to inject >sensible debugging code or any other strategies to find out what might >be the problem. > >> So you can use the full power of your development environment to hunt >> the problem: a

Re: Help for Python mock test suite needed

2016-08-17 Thread Andreas Tille
On Tue, Aug 16, 2016 at 06:23:43AM +1000, Ben Finney wrote: > Andreas Tille writes: > > > Yes, this is what I guessed from the log. However, how can I find out > > why exactly the command is not called? > > That seems to be a question to take up with the upstream developer, Yes. > or just nor

Re: Help for Python mock test suite needed

2016-08-15 Thread Ben Finney
Andreas Tille writes: > Yes, this is what I guessed from the log. However, how can I find out > why exactly the command is not called? That seems to be a question to take up with the upstream developer, or just normal Python debugging. Unless I'm misunderstanding, this doesn't appear to be a p

Re: Help for Python mock test suite needed

2016-08-15 Thread Andreas Tille
On Mon, Aug 15, 2016 at 05:00:52AM +1000, Ben Finney wrote: > > https://paste.debian.net/789238/ > > That appears to be a simple failure when the test suite is run. The > assertions, as reported, are in the ‘test_srst2’ module: > > = > […] > File "test_srst2.py", line 213, in test_run_bowti

Re: Help for Python mock test suite needed

2016-08-14 Thread Ben Finney
Andreas Tille writes: > https://paste.debian.net/789238/ That appears to be a simple failure when the test suite is run. The assertions, as reported, are in the ‘test_srst2’ module: = […] File "test_srst2.py", line 213, in test_run_bowtie_with_defaults run_mock.assert_called_once_with

Re: Help for Python mock test suite needed

2016-08-13 Thread Andreas Tille
On Sun, Aug 14, 2016 at 10:39:37AM +1000, Ben Finney wrote: > > There is no such link. > > You could make one: > > * Build the package using Sbuild (you are doing this already to ensure > the build works cleanly, right?) I actually uses pbuilder / cowbuilder for this purpose. > * Take the ou

Re: Help for Python mock test suite needed

2016-08-13 Thread Ben Finney
Andreas Tille writes: > Hi Scott, > > On Sat, Aug 13, 2016 at 12:41:42PM -0400, Scott Kitterman wrote: > > > > > > > > Any more complete hint from a possibly bowtie2 user would be helpful > > > > > > > > Andreas. > > > > > > > > [1] svn://anonscm.debian.org/debian-med/trunk/packages/srst2

Re: Help for Python mock test suite needed (Was: Any help with problem of srst2 new versions tests suite failing to call bowtie2)

2016-08-13 Thread Andreas Tille
Hi Scott, On Sat, Aug 13, 2016 at 12:41:42PM -0400, Scott Kitterman wrote: > > > > > > Any more complete hint from a possibly bowtie2 user would be helpful > > > > > > Andreas. > > > > > > [1] svn://anonscm.debian.org/debian-med/trunk/packages/srst2/trunk/ > > A link to a build log showin

Re: Help for Python mock test suite needed (Was: Any help with problem of srst2 new versions tests suite failing to call bowtie2)

2016-08-13 Thread Scott Kitterman
On Saturday, August 13, 2016 08:40:34 AM Andreas Tille wrote: > Hi, > > I've got no help on the Debian Med packaging list. Is there any hint > how I could track down a test Python suite issue what exact command > was called and failed? > > Thanks for any hint > > Andreas. > > On Tue, Aug