Re: Issue in test suite for armel (Was: Problems upgrading r-cran-fastcluster due to failed test in Python module)

On Saturday, 19 November 2016 11:46:29 CET Gard Spreemann wrote: > I guess we can just skip the test on armel? Oh wait, scratch that, that's stupid: Now that I think about it, it's certainly possible that fastcluster's code itself relies on correctly identifying NaNs. I can have a closer look in t

Re: Issue in test suite for armel (Was: Problems upgrading r-cran-fastcluster due to failed test in Python module)

On Friday, 18 November 2016 14:57:29 CET Andreas Tille wrote: > Hi, > > python-fastcluster seems to have an issue in the test suite for armel[1]: > Hi, Interesting! Since the test passed on all other architectures, could it be that certain Python floating point exceptions are simply not raised o

Issue in test suite for armel (Was: Problems upgrading r-cran-fastcluster due to failed test in Python module)

Hi, python-fastcluster seems to have an issue in the test suite for armel[1]: ... Method: average...OK. Meok test_nan (tests.fastcluster_test) ... FAIL test_vector (tests.fastcluster_test) ... thod: weighted...OK. ... Metric: mahalanobis...Method: single...OK. Metric: user...Mok

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

On Thu, Nov 17, 2016 at 12:10:03PM +0100, Gard Spreemann wrote: > ... > I think it would be a good idea for python-fastcluster to recommend > python-scipy and python3-fastcluster to recommend python3-scipy. Uploaded (unfortunately without the additional Recommends which I learned to late since I j

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

On Thursday, 17 November 2016 11:24:36 CET Gard Spreemann wrote: > It's pretty obvious now: The tests start with > > from scipy.spatial.distance import pdist, squareform > > so they require scipy. I suggest that python-scipy and python3-scipy > are added as build-deps. > I now see that the code

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

On Thu, 17 Nov 2016 at 12:25 Gard Spreemann wrote: > The weird thing is that this error does not occur when building on my > ordinary system (outside of the pbuilder chroot). Does pbuilder not > allow non-ASCII output or something? > Pbuilder is probably defaulting the locale to C, whereas your

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

On Thursday, 17 November 2016 10:50:06 CET Tristan Seligmann wrote: > On Thu, 17 Nov 2016 at 12:25 Gard Spreemann wrote: > > The weird thing is that this error does not occur when building on my > > ordinary system (outside of the pbuilder chroot). Does pbuilder not > > allow non-ASCII output or s

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

On Thursday, 17 November 2016 11:24:36 CET Gard Spreemann wrote: > However, the python3 version now fails with: > > File "/build/r-cran-fastcluster-1.1.21/src/python/tests/nantest.py", line > 7, in > Copyright (c) 2011 Daniel M\xfcllner, ''') > UnicodeEncodeError: 'asc

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

Hi again, and sorry for taking so long. It's pretty obvious now: The tests start with from scipy.spatial.distance import pdist, squareform so they require scipy. I suggest that python-scipy and python3-scipy are added as build-deps. That makes the python2 version build and test fine also in my

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

Hi Andreas, On Wednesday, 9 November 2016 17:08:01 CET Andreas Tille wrote: > I do not think so. Could you possibly try in a pbuilder sid chroot > whether you might be able to reproduce the issue? > In fact, it fails in the same way both in a Sid pbuilder and in a Stretch pbuilder, but not on my

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

Hi Gard, thanks for trying to track down the issue. On Wed, Nov 09, 2016 at 03:26:04PM +0100, Gard Spreemann wrote: > On Tuesday, 8 November 2016 18:38:22 CET Andreas Tille wrote: > > Hi, > > > > I tried to upgrade r-cran-fastcluster[1] which also created Python > > modules thanks to Gard Spreem

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

On Tuesday, 8 November 2016 18:38:22 CET Andreas Tille wrote: > Hi, > > I tried to upgrade r-cran-fastcluster[1] which also created Python > modules thanks to Gard Spreemann). Unfortunately the unit test of the > new version fails with […] > Hi all, I tried building on Stretch with the latest