Hi Jamie,
On Sat, May 10, 2014 at 09:22:29AM +1200, Jamie Norrish wrote:
> >
> > from .cpairwise2 import rint, _make_score_matrix_fast
> >
> > should do the trick.
>
> Indeed. This was actually reported and fixed a couple of months ago
> upstream[1]; I foolishly didn't check the closed bugs
On Fri, 2014-05-09 at 13:32 +0200, Jakub Wilk wrote:
> But in Python 3 imports as always absolute, unless explicitly
> requested, so the import fails, and this code snippet is no-op.
> Changing the import line to:
>
> from .cpairwise2 import rint, _make_score_matrix_fast
>
> should do the t
* Andreas Tille , 2014-05-09, 13:15:
thanks for your bug report. I think this should work out of the box
but I personally not comfortable with cpython to know how this could be
fixed. I keep the Debian Python list in CC - perhaps they might have
some helpful advise.
The relvant code in Bio/
[Andreas Tille, 2014-05-09]
> > >>> from cpairwise2 import rint
> > Traceback (most recent call last):
> > File "", line 1, in
> > ImportError: No module named 'cpairwise2'
> >
> > But some (presumably relevant; I know nothing about how Python
> > interfaces with C code) files are installed:
>
Hi Jamie,
thanks for your bug report. I think this should work out of the box but
I personally not comfortable with cpython to know how this could be
fixed. I keep the Debian Python list in CC - perhaps they might have
some helpful advise.
It seems this module is not affected by the test suite
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