Re: Issue in test suite for armel (Was: Problems upgrading r-cran-fastcluster due to failed test in Python module)

2016-11-19 Thread Gard Spreemann
On Saturday, 19 November 2016 11:46:29 CET Gard Spreemann wrote: > I guess we can just skip the test on armel? Oh wait, scratch that, that's stupid: Now that I think about it, it's certainly possible that fastcluster's code itself relies on correctly identifying NaNs. I can hav

Re: Issue in test suite for armel (Was: Problems upgrading r-cran-fastcluster due to failed test in Python module)

2016-11-19 Thread Gard Spreemann
On Friday, 18 November 2016 14:57:29 CET Andreas Tille wrote: > Hi, > > python-fastcluster seems to have an issue in the test suite for armel[1]: > Hi, Interesting! Since the test passed on all other architectures, could it be that certain Python floating point exceptions are simply not raised o

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

2016-11-17 Thread Gard Spreemann
On Thursday, 17 November 2016 11:24:36 CET Gard Spreemann wrote: > It's pretty obvious now: The tests start with > > from scipy.spatial.distance import pdist, squareform > > so they require scipy. I suggest that python-scipy and python3-scipy > are added as build-deps

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

2016-11-17 Thread Gard Spreemann
On Thursday, 17 November 2016 10:50:06 CET Tristan Seligmann wrote: > On Thu, 17 Nov 2016 at 12:25 Gard Spreemann wrote: > > The weird thing is that this error does not occur when building on my > > ordinary system (outside of the pbuilder chroot). Does pbuilder not > > allo

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

2016-11-17 Thread Gard Spreemann
On Thursday, 17 November 2016 11:24:36 CET Gard Spreemann wrote: > However, the python3 version now fails with: > > File "/build/r-cran-fastcluster-1.1.21/src/python/tests/nantest.py", line > 7, in > Copyright (c) 2011 Daniel M\xfcllner, <http://danifold.ne

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

2016-11-17 Thread Gard Spreemann
Hi again, and sorry for taking so long. It's pretty obvious now: The tests start with from scipy.spatial.distance import pdist, squareform so they require scipy. I suggest that python-scipy and python3-scipy are added as build-deps. That makes the python2 version build and test fine also in my

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

2016-11-09 Thread Gard Spreemann
Hi Andreas, On Wednesday, 9 November 2016 17:08:01 CET Andreas Tille wrote: > I do not think so. Could you possibly try in a pbuilder sid chroot > whether you might be able to reproduce the issue? > In fact, it fails in the same way both in a Sid pbuilder and in a Stretch pbuilder, but not on my

Re: Problems upgrading r-cran-fastcluster due to failed test in Python module

2016-11-09 Thread Gard Spreemann
On Tuesday, 8 November 2016 18:38:22 CET Andreas Tille wrote: > Hi, > > I tried to upgrade r-cran-fastcluster[1] which also created Python > modules thanks to Gard Spreemann). Unfortunately the unit test of the > new version fails with […] > Hi all, I tried building o