Re: Can "PDB" license be considered free ?

2016-03-07 Thread Peter Rice
Farm ... "but some are more equal than others" Hope that helps, Peter Rice

Re: Embassy phylipnew - please use freely licensed source of phylip

2016-07-26 Thread Peter Rice
Hi Andreas, This was a restoration of the 6.6.0 release files which had been lost when the FTP server was reset, and a correction of the file names which should have been .660 on the original FTP server. The same applies to the other EMBASSY packages. regards, Peter Rice EMBOSS Team On 25

Re: Embassy phylipnew - please use freely licensed source of phylip

2016-07-28 Thread Peter Rice
simplest to do. regards, Peter Rice EMBOSS Team On 27/07/2016 07:05, Andreas Tille wrote: Hi Peter, On Tue, Jul 26, 2016 at 10:34:21PM +0100, Peter Rice wrote: This was a restoration of the 6.6.0 release files which had been lost when the FTP server was reset, and a correction of the file

Re: [emboss-bug] LEG: Optimisation and porting - assembly

2013-04-03 Thread Peter Rice
ce my old email address expired! regards, Peter Rice EMBOSS team -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/1364978098.97619.yahoomail...@web171903.mail.ir2.yahoo.com

Re: Please test emboss packaging in Git

2013-09-09 Thread Peter Rice
;ll upload might not harm. Happy to help! Peter Rice EMBOSS Team -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/522ded42.90...@yahoo.co.uk

Re: Biological data being used by an unpublished research paper is considered proprietary

2013-09-16 Thread Peter Rice
package because the licensing of SwissProt does not allow them to be edited. That was resolved by agreeing that scientific facts should not be edited so that the files could be accepted as part of a Debian package even though they could not be changed. A fine compromise I feel. regards, Peter

RE: Status of EMBOSS [Was: Bug#762673: emboss: FTBFS on hurd-i386]

2014-09-24 Thread Peter Rice
Out of office for next two weeks but will take a look when I get back. Too few changes for a new EMBOSS release this summer regards, Peter Rice EMBOSS Team -Original Message- From: "Andreas Tille" Sent: ‎24/‎09/‎2014 13:23 To: "Debian Med Project List" Subject: S

Re: PHYLIP is now free software

2015-05-12 Thread Peter Rice
Hi Andreas On 12/05/2015 10:21, Andreas Tille wrote: Hi EMBOSS team, I would like to inform you that the authors of PHYLIP have put their code under a BSD-2-clause license last autumn. So the phylip package in Debian went from non-free into the main Debian distribution. Since there is another

Re: description of debian-med packages using EDAM

2015-07-13 Thread Peter Rice
tions regarding this. Happy to help with any suggestions, very keen to increase the usefulness and use of EDAM. regards, Peter Rice -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: [EMBOSS] Files included in EMBOSS but licensed under Creative Commons Attribution-NoDerivs

2011-07-29 Thread Peter Rice
e a few example entries with EMBOSS then I'll check with the other Open Bio projects. This is really silly. regards, Peter Rice EMBOSS Team -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Ar

Re: [EMBOSS] Files included in EMBOSS but licensed under Creative Commons Attribution-NoDerivs

2011-07-29 Thread Peter Rice
wn way to run the QA tests. I don't think we have a problem. regards, Peter Rice EMBOSS Team regards, Peter Rice -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4e326562.1020...@ebi.ac.uk

Re: [EMBOSS] Files included in EMBOSS but licensed ...

2011-07-29 Thread Peter Rice
On 07/29/2011 08:46 AM, Peter Rice wrote: > On 28/07/2011 15:38, Charles Plessy wrote: >> Dear EMBOSS developers, >> (CC Debian Med mailing list) >> >> while working on upgrading Debian's emboss package to version 6.4.0 >> (congratulations, by the way), I foun

Re: [EMBOSS] Files included in EMBOSS but licensed ...

2011-07-30 Thread Peter Rice
d. This is essential for many of the public bioinformatics databases. Data and software are not the same in this context. I am curious whether documentation licensing raises any issues. Just my 2c worth Peter Rice EMBOSS Team -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian

Re: Debian Med sprint II in Southport, UK - any objections to the last weekend in January?

2011-08-10 Thread Peter Rice
On 08/10/2011 05:33 PM, Tim Booth wrote: > For now I just want to set a date, so I'll propose the last weekend in > January - the 27th,28th,29th - as per last time. Please let me know if: > > a) You want to come but can't make that date > b) You want to come but can't do a weekend I will be mov

Re: ELIXIR & Debian(-Med)

2020-09-04 Thread Peter Rice
Hi Michael, Happy to help if I can. The article refers to data resources, but I would expect a software resource to qualify. The ELIXIR tools specialists are ELIXIR Denmark https://www.elixir-denmark.org/ They should also be able to help. regards, Peter Rice On 04/09/2020 15:27

Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal

2021-12-13 Thread Peter Rice
Hi Andreas, I can take a look. What's the problem? Still working through getting EMBOSS moved to github with all the past releases. Nearly there. Then I play a lot of testing and updates for anything that has run into problems. regards, Peter Rice On 13/12/2021 17:55, Andreas Tille