Re: problem with debian-med list

2009-09-28 Thread Nelson A. de Oliveira
Hi! On Mon, Sep 28, 2009 at 12:31 PM, Eric MAEKER wrote: > But 'svn checkout svn+ssh://svn.debian.org/svn/debian-med/trunk' ask me to > type a password and does not reconize it. It seems that you are missing your username: svn co svn+ssh://ericmaeker-gu...@svn.debian.org/svn/debian-med/trunk/

Re: ncbi-tools onder Debian Med group maintenance?

2009-09-28 Thread Nelson A. de Oliveira
Hi! On Tue, Sep 29, 2009 at 12:08 AM, Aaron M. Ucko wrote: > Great; thanks!  I have been tracking full history in a private svn > repository, so I'll be wanting to convert that to git; any tips on > doing so? See the package git-svn Best regards, Nelson -- To UNSUBSCRIBE, email to debian-med-

Typo in phyml version number?

2009-10-07 Thread Nelson A. de Oliveira
Hi! While fixing the watch file of phyml, I saw that its version number in debian/changelog is 200900706 while upstream version is 20090706 (there is one more zero on our version number). Is this a typo? Best regards, Nelson -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with

Re: Pending upload: dicomscope / pixelmed

2009-12-14 Thread Nelson A. de Oliveira
On Mon, Dec 14, 2009 at 1:37 PM, Mathieu Malaterre wrote: >  Does anyone knows if there is something particular going on with NEW > package ? dicomscope/pixelmed have not been uploaded (submitted ~3 > weeks ago). Actually it can take months (so 3 week is normal) to new packages be processed. It o

Re: [Debian-med-packaging] dicomscope_3.6.0-1_i386.changes REJECTED

2009-12-17 Thread Nelson A. de Oliveira
Hi! On Thu, Dec 17, 2009 at 8:13 PM, Barry deFreese wrote: > Ah, if the pdfs were generated from the source then that is OK and is my > mistake.  The lut files sound OK too.  If those were the only two binary file > types, we should be OK, just re-upload and I will fast-track it. Just a suggesti

Re: [Debian-med-packaging] Bug#565004: insighttoolkit: ftbfs with gcc-4.5

2010-01-12 Thread Nelson A. de Oliveira
Hi! On Tue, Jan 12, 2010 at 11:04 PM, Matthias Klose wrote: > /usr/include/c++/4.5/bits/stl_uninitialized.h: In function 'void > std::__uninitialized_construct_range(_ForwardIterator, _ForwardIterator, > _Tp&)': > /usr/include/c++/4.5/bits/stl_uninitialized.h:231: error: a function call > cann

Re: some broke our website

2010-07-02 Thread Nelson A. de Oliveira
Hi! (It wasn't me who broke it) It works nicely here on Chomium, Opera and Iceweasel. But indeed, it fails to validate with the W3C validator. I have removed one php close tag (that was wrong). Steffen, can you see if it still fails on Firefox, please? Best regards, Nelson -- To UNSUBSCRIBE,

Re: some broke our website

2010-07-02 Thread Nelson A. de Oliveira
Hi Steffen! On Fri, Jul 2, 2010 at 1:14 PM, Steffen Möller wrote: > It is the very same, still. I think it is just the … that it > complains about. Removed all the ellipsis entries (they weren't necessary, but indeed it would be better to use … instead …) Can you do a new test? Best regards, Ne

Re: [med-svn] r4993 - trunk/community/website

2010-07-02 Thread Nelson A. de Oliveira
Hi Steffen! On Fri, Jul 2, 2010 at 1:41 PM, Steffen Möller wrote: > this has fixed the first problem. Now another one surfaced. Now it should be clean it seems. Can you retest it only to confirm, please? Best regards, Nelson -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with

Compile flags for hmmer

2010-09-27 Thread Nelson A. de Oliveira
Hi! Still about the compiler flags for hmmer (#594860), on i386 [1] and kfreebsd-i386 [2] it's being used the SSE implementation (compiled with -msse2). While it's almost sure that people who use hmmer have processors >= Pentium 4 and Athlon 64, there is still a small probability that some users

Re: Compile flags for hmmer

2010-09-27 Thread Nelson A. de Oliveira
Hi again! On Mon, Sep 27, 2010 at 3:05 PM, Nelson A. de Oliveira wrote: > Still about the compiler flags for hmmer (#594860), on i386 [1] and > kfreebsd-i386 [2] it's being used the SSE implementation (compiled > with -msse2). Also on hurd-i386 (from https://buildd.debian.org/stat

Re: OpenMRS package is ready, I believe

2010-09-28 Thread Nelson A. de Oliveira
Hi Misha! On Tue, Sep 28, 2010 at 11:06 PM, misha680 wrote: > Here is a link to the uploaded package: > http://www.2shared.com/file/SeV8AGVg/openmrs_161-1_all.html The binary packages (.deb files) aren't usefull for review. We need the .dsc, .orig.tar.gz (or .orig.tar.bz2) and the .diff.gz (.deb

Re: [Debian-med-packaging] Bug#594860: Bug#594860: Bug#594860: Workaround for #594860

2010-10-24 Thread Nelson A. de Oliveira
Hi Steffen! On Sun, Oct 24, 2010 at 10:57 PM, Steffen Möller wrote: > Hi Gregor, have many thanks! I'll upload later tonight. Note that on i386, kfreebsd-i386 and hurd-i386 it should be patched to don't use SSE too. See http://lists.debian.org/debian-med/2010/09/msg00062.html Best regards, Nels

Re: Please proofread paper

2010-12-09 Thread Nelson A. de Oliveira
On Fri, Dec 10, 2010 at 12:08 AM, Michael Hanke wrote: > I committed another set of changes, but then started to conflict with > 'naoliv' and stopped for now. When is the final deadline? Sorry :-( I did finish the typos that I found, however, so there won't be any more conflicts caused by me. B

Re: Please proofread paper

2010-12-10 Thread Nelson A. de Oliveira
Hi! On Fri, Dec 10, 2010 at 11:18 AM, Nicolas Barbier wrote: > Patch for paper-text.tex attached. I have commited your changes, thank you! Best regards, Nelson -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.d

Re: smile

2011-05-20 Thread Nelson A. de Oliveira
Hi! On Fri, May 20, 2011 at 6:49 PM, Thorsten Alteholz wrote: > PS: Does anybody know of problems with alioth? All my connections are > refused. Wouldn't this be a nice opportunity for a tweet? http://lists.debian.org/debian-infrastructure-announce/2011/05/msg0.html ;-) Best regards, Nelso

Re: rev 6863 (Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6)

2011-05-30 Thread Nelson A. de Oliveira
Hi! On Mon, May 30, 2011 at 6:07 PM, Thorsten Alteholz wrote: > There are about 1800 files to be checked. > Are there any tools to make this task a bit easier? licensecheck (from the devscripts package) can help you, but it's still highly recommended to manually review all the files (there are c

Locked files in our SVN repository

2011-07-18 Thread Nelson A. de Oliveira
Hi! I did a new checkout from our SVN repository (svn checkout svn+ssh://nao...@svn.debian.org/svn/debian-med/trunk) to update raster3d but I saw that all files are locked. Am I missing something or it's lack of caffeine? Thank you! Best regards, Nelson -- To UNSUBSCRIBE, email to debian-med

Re: Locked files in our SVN repository

2011-07-18 Thread Nelson A. de Oliveira
On Mon, Jul 18, 2011 at 11:36 AM, Nelson A. de Oliveira wrote: > Am I missing something or it's lack of caffeine? As always, the problem is the stupid user :-) It seems that files were locked due to an interrupted "svn update" (thus needing a "svn cleanup") B

Re: Blog about Debian Med BOF

2011-08-03 Thread Nelson A. de Oliveira
Hi! On Wed, Aug 3, 2011 at 6:26 AM, Andreas Tille wrote: > BTW, is there anybody who might care for including the Debian Med blog > into planet.debian.org? The name that will appear on Planet is better as "Debian Med" or "Debian in Biology and Medicine"? Best regards, Nelson -- To UNSUBSCRIB

Re: Blog about Debian Med BOF

2011-08-03 Thread Nelson A. de Oliveira
On Wed, Aug 3, 2011 at 8:11 AM, Nelson A. de Oliveira wrote: > The name that will appear on Planet is better as "Debian Med" or > "Debian in Biology and Medicine"? Or "Debian Med Team" or a better name :-) Best regards, Nelson -- To UNSUBSCRIBE, email to

Re: Blog about Debian Med BOF

2011-08-03 Thread Nelson A. de Oliveira
Hi! On Wed, Aug 3, 2011 at 8:21 AM, Andreas Tille wrote: > As a planet.d.o ignorant I can not give good advise here.  If the usual > Blogs are issued by *persons* the "Debian Med Team" is probably matching > this person-approach.  If also *projects* are posting there any of the > above suggestion

Re: Blog about Debian Med BOF

2011-08-03 Thread Nelson A. de Oliveira
On Wed, Aug 3, 2011 at 8:35 AM, Nelson A. de Oliveira wrote: > If I did it right, it should appear as "Debian Med" Already updated. It's there! :-) -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact

Re: "Could not perform immediate configuration" with debian-med

2011-08-05 Thread Nelson A. de Oliveira
Hi! On Fri, Aug 5, 2011 at 1:24 PM, Scott Cain wrote: >  E: Internal Error, Could not perform immediate configuration (2) on > perl-modules It seems to be http://bugs.debian.org/548848, http://bugs.debian.org/548860 and others Best regards, Nelson -- To UNSUBSCRIBE, email to debian-med-requ..

Re: debian-med svn checkout

2011-08-11 Thread Nelson A. de Oliveira
Hi Dominique! On Thu, Aug 11, 2011 at 1:04 PM, Dominique Belhachemi wrote: > Does the following description work for anyone since the changes on alioth? For SVN it works: svn co svn+ssh://svn.debian.org/svn/debian-med/trunk/ For git: git clone git+ssh://git.debian.org/git/debian-med/package.g

Re: debian-med svn checkout

2011-08-11 Thread Nelson A. de Oliveira
Hi! On Thu, Aug 11, 2011 at 1:25 PM, Dominique Belhachemi wrote: > It still doesn't work for me. All I get is the following error message: Can you ssh directly to the host? Are you using VerifyHostKeyDNS in your ~/.ssh/config for Debian hosts? "ssh -v svn.debian.org" can give us more info (you

sofa-framework failing to build

2011-08-18 Thread Nelson A. de Oliveira
Hi! After updating sofa-framework (both the build-deps for the new libqwt-dev and an include path) I can't pass this: http://people.debian.org/~naoliv/misc/sofa-framework_1.0~beta4-6_i386.build.txt Any ideas/suggestion/patches? :-) Latest debian/ dir is in our SVN. Thank you! Best regards, Nel

Re: Latest blog post

2011-08-22 Thread Nelson A. de Oliveira
Hi! On Mon, Aug 22, 2011 at 12:34 PM, Steffen Möller wrote: > For the future, is there a way to have some bits not forwarded? > Or to have them only selectively forwarded? Well, the mailing > list, probably. You can tag the posts and have a RSS (for that specific tag) that will be published in P

(Maybe) future Debian-Med packages

2005-03-18 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi As Andreas Tille said to me, I am posting here some bioinformatic programs. CARA: Computer Aided Resonance Assignment Homepage: http://www.nmr.ch/ License: Free (none specified). In the future will be released under Sleepycat license. Upstream author

Re: (Maybe) future Debian-Med packages

2005-03-19 Thread Nelson A. de Oliveira
Koradi <[EMAIL PROTECTED]>, but without sucess. No answer from him. I have not tried to contact Bruker. -- Nelson A. de Oliveira __ Acabe com aquelas janelinhas que pulam na sua tela. AntiPop-up UOL - É grátis! http://antipopup.uol.com.br/

Re: (Maybe) future Debian-Med packages

2005-03-19 Thread Nelson A. de Oliveira
Hi > > FASTA: Compares a protein sequence to another protein sequence or to a > This is Debian already, isn't it? Hum... I didn´t find it. $ apt-cache search fasta seaview - [Biology] A multiple sequence alignment editor clustalw - [Biology] Global multiple nucleotide or peptide sequence alignme

3 new packages

2005-03-25 Thread Nelson A. de Oliveira
debian/copyright file. Also, could someone verify the quality of the packages, if they are OK? Thank you very much Nelson A. de Oliveira __ Acabe com aquelas janelinhas que pulam na sua tela. AntiPop-up UOL - É grátis! http

3 new packages (complement)

2005-03-25 Thread Nelson A. de Oliveira
Hi I forgot so say. The 3 packages are linda and lintian clean. They are OK with pbuilder too. Sorry :-) Cheers, Nelson A. de Oliveira __ Acabe com aquelas janelinhas que pulam na sua tela. AntiPop-up UOL - É grátis

Re: 3 new packages

2005-03-28 Thread Nelson A. de Oliveira
Hi Andreas Andreas Tille wrote: On Fri, 25 Mar 2005, Nelson A. de Oliveira wrote: gff2aplot: Pair-wise alignment-plots for genomic sequences in PostScript. Just uploaded. Thanks! :-) gff2ps: Produces PostScript graphical output from GFF-files. > It depends from bash 3.0. Is this depende

gff2ps

2005-03-28 Thread Nelson A. de Oliveira
Hi Andreas About gff2ps. I just saw that there is a gff2ps written in Perl, available on the Bioperl package. The file is /usr/share/doc/bioperl/examples/tools/gff2ps.pl.gz I thought about it and saw that maybe another gff2ps might be duplicated work. But on the other side, the user must instal

Raster3D

2005-03-30 Thread Nelson A. de Oliveira
Hi The new Raster3D packages are available here: http://biolinux.df.ibilce.unesp.br/naoliv/med/raster3d As Andreas suggested, the package now is splitted in two packages. One -doc, with documents and examples (binary independent) and another one with the binary files. Could someone verify if w

Re: Raster3D

2005-03-30 Thread Nelson A. de Oliveira
se CDBS :) I know this. But when I said that I was thinking on gff2aplot (I did it using CDBS) ;-) BTW, I think I will redo rasted3d using CDBS. Thank you very much Michael!!! Cheers Nelson A. de Oliveira __ Acabe com

Raster3D (more one time)

2005-04-01 Thread Nelson A. de Oliveira
Hi people I have a new Raster3D package. Now with patches in separated files and using CDBS. I have applied Michael's advices [thanks! :-) ] Could someone verify the package for me? Available at: http://biolinux.df.ibilce.unesp.br/naoliv/med/raster3d/ Cheers Nelson -- To UNSUBSCRIBE, email to [EM

Re: Raster3D

2005-04-07 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi Andreas Tille wrote: >> - Don't make raster3d depend on raster3d-doc, a suggests: or at most >> recommends: is enough. Oh, does raster3d-doc contain data files >> necessary for running raster3d? In that case, you should probably >> rename it to

Re: Raster3D (part 2)

2005-04-07 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi I have remembered the other question. On raster3d's Makefile, it uses -fsigned-char on GCC and G77 when building binaries for the PPC arch. And I never used a Linux on PPC... I don't know if raster3d will compile and run OK on PPC. This is the onl

Re: Raster3D

2005-04-09 Thread Nelson A. de Oliveira
Hi! New Raster3D packages again :-) http://biolinux.df.ibilce.unesp.br/naoliv/med/raster3d/ HTML and example files on correct directory (I hope), doc-base included, moved raster3d-data back to raster3d. Linda and Lintian clean. Working OK for me. Andreas, could you see if there is something mor

Re: Raster3D

2005-04-09 Thread Nelson A. de Oliveira
nks for your work No, no... it's thanks to you! You are teaching me a lot and being very pacient! :-) Cheers Nelson A. de Oliveira __ Acabe com aquelas janelinhas que pulam na sua tela. AntiPop-up UOL - É grátis! http://antipopup.uol.com.br/

Raster3D (and gff2aplot too)

2005-04-15 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi Andreas! Andreas Tille wrote: >Perhaps providing a README.Debian might make sense - but not (...) I made 2 README.Debian. One for raster3d and other for raster3d-doc. They are basically explaining that raster3d-doc could be useful and that the

Re: Raster3D (and gff2aplot too)

2005-04-22 Thread Nelson A. de Oliveira
important). > Done. Thanks for uploading! :-) Raster3D packages available at the usual location: http://biolinux.df.ibilce.unesp.br/naoliv/med/raster3d/ Thank you very much Andreas! Cheers Nelson A. de Oliveira __

Re: Raster3D (and gff2aplot too)

2005-04-23 Thread Nelson A. de Oliveira
n (and verify, compile, etc). Thank you Nelson A. de Oliveira __ Acabe com aquelas janelinhas que pulam na sua tela. AntiPop-up UOL - É grátis! http://antipopup.uol.com.br/

Re: pngquant

2005-04-29 Thread Nelson A. de Oliveira
Hi, Andreas Tille wrote: > I have seen that Nelson A. de Oliveira builded a package of pngquant. > Because Nelson recently became famous here for biological programs > I guess this program has some relevance for our project. Nelson, could > you confirm this and tell me, whether

Re:I want to colaborate with debian-med

2005-05-22 Thread Nelson A. de Oliveira
packages and take the better from both! ;-) When I return (tuesday), we can talk more about bioFOX, OK? :-) Cheers, Nelson A. de Oliveira __ UOL Fone: Fale com o Brasil e o Mundo com até 90% de economia. http://www.uol.com.br/fone

Re: Biology packages in FreeBSD

2005-05-24 Thread Nelson A. de Oliveira
his >packages to the Debian mirror. I would also spend some time on some of > these >packages (perhaps tagging myself as "Uploader" for the packages). If there is something that I could help, let me know, please. Cheers, Nelson A. de Oliveira _

gff2ps Debian package

2005-06-01 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi all (I think that) gff2ps package is ready. Could someone take a look, test, and see if everything is OK, please? Also, I will need a sponsor for the package :-) Pckage, source, etc, available at: http://biolinux.df.ibilce.unesp.br/naoliv/med/gff2

gdpc Debian package

2005-06-01 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi again The same thing that I said for gff2ps :-) Could someone test the package, use the program, etc? Source, packages, all here: http://biolinux.df.ibilce.unesp.br/naoliv/med/gdpc/ Thank you! Nelson -BEGIN PGP SIGNATURE- Version: GnuPG

Re: Preconfiguration of Firefox

2006-02-04 Thread Nelson A. de Oliveira
Hi! Andreas Tille wrote: On Mon, 30 Jan 2006, Charles Plessy wrote: Not sure. It seems that biofox is a toolbar with many functionalities. In mozilla-derived browsers, there is a small field right of the url field, from which a google search can be started. Other search engines can be added,

Re: Preconfiguration of Firefox

2006-02-12 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi! Andreas Tille wrote: >> example, a search engine to find things on Pubmed, we can get an >> already implemented search engine for Pubmed at >> http://mycroft.mozdev.org/plugins/pubmed.src (I didn't saw any >> license on this file, > > > Would any

Re: Preconfiguration of Firefox

2006-02-19 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi! >>>IMHO we also would net a license here. From its location at >>>mozdev.org I'm optimistic that it is free, but we should verify >>>this. Hum... no... :-( - From http://www.mozdev.org/copyright.html, we can see: "All code for each project host

Re: Preconfiguration of Firefox

2006-02-22 Thread Nelson A. de Oliveira
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi! Andreas Tille wrote: > On Sun, 19 Feb 2006, Nelson A. de Oliveira wrote: > >> What we can do is: try to contact each plugin developer and ask him >> about distributing his plugin under MPL and a free license (dual >>

Search plugins of Firefox

2006-03-28 Thread Nelson A. de Oliveira
Hi people! Just to update you about the plugins for Firefox. I need to send a ping to Biocyc author, remembering him about his plugin and if he can release it under another license or dual license it. The plugins to search patents are now released under the BSD license (with the PNG files needed

Re: Tentative howto for attracting new members into the debian-med project

2006-05-22 Thread Nelson A. de Oliveira
Hi! On 5/22/06, Charles Plessy <[EMAIL PROTECTED]> wrote: I have wrote the attached howto, which I send to this list for comments. Its source is in docbook, so it is intended to be a html or pdf document in its final version. Good! :-) I welcome any comment. I did my best, but I am a beginne

Re: Mass bug filing: lesstif1->lesstif2 transition

2006-06-16 Thread Nelson A. de Oliveira
Hi! On 6/16/06, Charles Plessy <[EMAIL PROTECTED]> wrote: I can write one for clustalw and submit it. Also, I would like to add a french entry in the one of NJplot, as I did for TreeViewX. The Ubuntu does not contain them. If you need entries in Brazilian Portuguese (pt_BR), I can help you. Ju

Re: .desktop and translations

2006-06-16 Thread Nelson A. de Oliveira
Hi Charles! On 6/17/06, Charles Plessy <[EMAIL PROTECTED]> wrote: here are the .desktop files for njplot, unrooted njplot, and clustalx. I do not know if I should write one for clustalw. Any opinion? I also If I am not wrong, clustalw is a text mode application and clustalx is a graphical inte

Re: .desktop and translations

2006-06-21 Thread Nelson A. de Oliveira
Hi! On 6/17/06, Charles Plessy <[EMAIL PROTECTED]> wrote: Maybe an elegant solution would be to have a nice icon for Clustal X, and a terminal icon for Clustal W. But as it is a default terminal which is spawned, it would be strange that the icon does not match (one would want a Konsole icon if

Translate a package description!

2006-07-31 Thread Nelson A. de Oliveira
Hi people! To answer Charles Plessy's question [1] and also to inform the rest of the list that don't read the debian-devel mailing list. There is a new feature of apt (available on experimental right now): package descriptions available in all languages! [2] Well, not every package is already tr

Biosquid, HMMER and an update to microbio.wml

2006-08-06 Thread Nelson A. de Oliveira
Hi people! Andreas Tille kindly uploaded a new package: biosquid [1], a set of utilities for biological sequence analysis. It's on the NEW queue [2] now, waiting for the FTP-masters approval. The package description is: SQUID is a library of C code functions for sequence analysis. It also inclu

Re: Biosquid, HMMER and an update to microbio.wml

2006-08-07 Thread Nelson A. de Oliveira
Hi! On 8/7/06, Charles Plessy <[EMAIL PROTECTED]> wrote: This is good news. The debian package is listed as "ageing" on the hmmer homepage. Can you drop them a mail when the package is updated, so that they also update their informations? I know this :-) I will contact Sean when I get Hmmer up

One more sponsor for Debian-med

2006-12-06 Thread Nelson A. de Oliveira
Hi people! It's with great pleasure that I am sending this email to you know that I was accepted as a Debian Developer! :-) And the minimum that I can do is try to help Andreas, who always helped me a lot. So people needing a sponsor with Debian-med related packages (or even not related) or any o

Re: [De] Open Source factory enables us to work on their Debian Box

2007-01-07 Thread Nelson A. de Oliveira
Hi On 1/7/07, Laurent FRANCOIS <[EMAIL PROTECTED]> wrote: What does CDD means...??? It's a Custom Debian Distribution. See http://wiki.debian.org/CustomDebian3 and http://people.debian.org/~tille/debian-med/talks/200507_debconf5-cdd/index_en.html Best regards, Nelson -- To UNSUBSCRIBE, emai

Re: [De] Open Source factory enables us to work on their Debian Box

2007-01-07 Thread Nelson A. de Oliveira
On 1/7/07, Nelson A. de Oliveira <[EMAIL PROTECTED]> wrote: On 1/7/07, Laurent FRANCOIS <[EMAIL PROTECTED]> wrote: > What does CDD means...??? It's a Custom Debian Distribution. See http://wiki.debian.org/CustomDebian3 and There isn't this "3" on the

Re: [De] Open Source factory enables us to work on their Debian Box

2007-01-07 Thread Nelson A. de Oliveira
Hi one more time. On 1/7/07, Nelson A. de Oliveira <[EMAIL PROTECTED]> wrote: There isn't this "3" on the URL... it's http://wiki.debian.org/CustomDebian And there are more talks about CDD here: http://people.debian.org/~tille/debian-med/talks/ Seems that I need to

Maintainer and uploaders fields of debian-med packages

2007-01-09 Thread Nelson A. de Oliveira
Hi all! I am with a new package ready to be uploaded (sibsim4 - http://sibsim4.sourceforge.net/), but I am with a doubt. What do I put on the fields Maintainer and Uploaders? If I only include me and "Debian-Med Packaging Team <[EMAIL PROTECTED]>", then I think that it will be wrong (because the

Re: Maintainer and uploaders fields of debian-med packages

2007-01-09 Thread Nelson A. de Oliveira
Just correcting the link On 1/10/07, Nelson A. de Oliveira <[EMAIL PROTECTED]> wrote: People from http://alioth.debian.org/project/memberlist.php?group_id=30063? http://alioth.debian.org/project/memberlist.php?group_id=30063 ? Nelson -- To UNSUBSCRIBE, email to [EMAIL PROTECTED]

Re: Maintainer and uploaders fields of debian-med packages

2007-01-09 Thread Nelson A. de Oliveira
On 1/10/07, Andreas Tille <[EMAIL PROTECTED]> wrote: In general: If you are the only maintainer you are fre to leave out the Uploaders field. Keeping debian-med-packaging as Uploaders is a nice thing to do because it keeps interested people informed about the Upload itself (and if I'm not comple

Re: Maintainer and uploaders fields of debian-med packages

2007-01-09 Thread Nelson A. de Oliveira
Hi! On 1/10/07, Charles Plessy <[EMAIL PROTECTED]> wrote: Thanks a lot for this new package (did I miss the ITP ?) http://lists.debian.org/debian-devel/2007/01/msg00345.html ;-) I suggest that you put only yourself as an uploader and the list as maintainer. This way, everybody will be inform

Re: Maintainer and uploaders fields of debian-med packages

2007-01-11 Thread Nelson A. de Oliveira
Hi! Thank you Andreas and Charles! Now I am understanding better how the things work! :-) Also, you are free to change/modify/improve any of my packages if you feel that it's needed. I won't dislike any NMU or if someone is added as uploader. Thank you again! Best regards, Nelson -- To UNSUBS

Re: [Pkg-emboss-devel] Re: EMBOSS 4.1.0 released

2007-03-09 Thread Nelson A. de Oliveira
Hi! On 3/10/07, Charles Plessy <[EMAIL PROTECTED]> wrote: Unpacking emboss-lib (from emboss-lib_4.1.0-1_powerpc.deb) ... dpkg: error processing emboss-lib_4.1.0-1_powerpc.deb (--install): trying to overwrite `/usr/include/pcre.h', which is also in package libpcre3-dev What is the role of thos

Re: RFS: emboss-explorer

2007-05-12 Thread Nelson A. de Oliveira
ead of me as a person who never even started Emboss. $ who-uploads emboss Uploads for emboss: 4.1.0-1 to experimental: Nelson A. de Oliveira <[EMAIL PROTECTED]> Bah! He has the same name as me! :-) David, your package fails to build: (...) perl Makefile.PL INSTALLDIRS=vendor Checking

Re: RFS: emboss-explorer

2007-05-13 Thread Nelson A. de Oliveira
Hi David! On 5/13/07, David Paleino <[EMAIL PROTECTED]> wrote: > And some (more) doubts on README.Debian: > How secure is to run the cron as root? Can't it be run with a less > privileged user? (if yes, then it's better on my opinion) Well, the cron removes files from /var/www/emboss/output. Us

Re: RFS: emboss-explorer

2007-05-13 Thread Nelson A. de Oliveira
Hi! On 5/13/07, Charles Plessy <[EMAIL PROTECTED]> wrote: Le Sun, May 13, 2007 at 05:48:16AM -0300, Nelson A. de Oliveira a écrit : > Section 2.3 of the New Maintainer's Guide says that the source package > should be moved to packagename-version (see > http://www.debian.or

Re: RFS: emboss-explorer

2007-05-13 Thread Nelson A. de Oliveira
Hi David! On 5/13/07, David Paleino <[EMAIL PROTECTED]> wrote: > There is a separate Alioth project for EMBOSS, and I added you in. I > think that it is worthwile to upload emboss-explorer there rather than > in the debian-med SVN. For the moment it can look like over-engeneering, > but in the f

Re: emboss-explorer: status

2007-05-30 Thread Nelson A. de Oliveira
Hi David! On 5/29/07, David Paleino <[EMAIL PROTECTED]> wrote: what's the status of emboss-explorer? It hasn't been uploaded, and it's still waiting in mentors.debian.net. I believe it hasn't any more problems, or maybe I forgot to fix some? Sorry for the delay. I was moving to a new job, I ha

Re: Can somebody sponsor emboss-explorer in unstable ?

2007-07-15 Thread Nelson A. de Oliveira
Hi Charles! On 7/15/07, Charles Plessy <[EMAIL PROTECTED]> wrote: Could somebody sponsor emboss-explorer ? The dsc file is here: When I arrive at home I will upload it. Best regards, Nelson -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAI

Re: Can somebody sponsor emboss-explorer in unstable ?

2007-07-15 Thread Nelson A. de Oliveira
Hi! On 7/15/07, Charles Plessy <[EMAIL PROTECTED]> wrote: Could somebody sponsor emboss-explorer ? The dsc file is here: And the package is uploaded! :-) Thank you Best regards, Nelson -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PR

Re: Sumarizing Amide packaging status

2007-07-19 Thread Nelson A. de Oliveira
Hi! On 7/19/07, Andreas Tille <[EMAIL PROTECTED]> wrote: 4. Amide License: GPL Patent issues: Not known in Amide code Download: http://amide.sourceforge.net/ Status of packaging: #409913 Source at http://user.cs.tu-berlin.de/~domibel/amide

Re: Sumarizing Amide packaging status

2007-07-20 Thread Nelson A. de Oliveira
Hi! On 7/20/07, Karsten Hilbert <[EMAIL PROTECTED]> wrote: >> Amide is waiting on the NEW queue. It's the same file from the above link. What does this mean for potential testers ? It means that, theoretically, the package is ready to be used by end users and also installed on Debian's archive

Re: Please upload boxshade 3.3.1-2, which fixes a wishlist bug.

2007-08-08 Thread Nelson A. de Oliveira
Hi! On 8/8/07, Charles Plessy <[EMAIL PROTECTED]> wrote: > I have prepared a revised version of boxshade source package, which now > allows to build unstripped binaries. (Nothing wrong with the package, but asking this won't hurt anybody) I was going to upload it now but I thought that it's bette

Re: Problems with compiling and running clustalx

2007-08-11 Thread Nelson A. de Oliveira
Hi! On 8/11/07, Sasa Ranisavljevic <[EMAIL PROTECTED]> wrote: > i have installed clustalx from official Debian package ( with apt-get ), > but when I try to run it i get following error: > > do_wait: drmWaitVBlank returned -1, IRQs don't seem to be working correctly. > Try running with LIBGL_THROT

Re: Problems with compiling and running clustalx

2007-08-11 Thread Nelson A. de Oliveira
Hi again! On 8/12/07, Nelson A. de Oliveira <[EMAIL PROTECTED]> wrote: > On 8/11/07, Sasa Ranisavljevic <[EMAIL PROTECTED]> wrote: > > i have installed clustalx from official Debian package ( with apt-get ), > > but when I try to run it i get following error: >

Re: Three more packages in mentors.d.n

2007-08-20 Thread Nelson A. de Oliveira
Hi! On 8/20/07, Charles Plessy <[EMAIL PROTECTED]> wrote: > Actually, I have a few other packages in the pipeline: All uploaded. Thank you! Best regards, Nelson -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Problems with compiling and running clustalx

2007-08-20 Thread Nelson A. de Oliveira
Hi! (Bad to see how I forget some emails) :-( On 8/12/07, Charles Plessy <[EMAIL PROTECTED]> wrote: > Ouch, that is a bad one... I just reproduced an a i386 computer running > Lenny... I have sent a private mail to lesstif2's maintainer to ask for > his opintion. By the way, I thought about incre

Re: Three more packages in mentors.d.n

2007-08-20 Thread Nelson A. de Oliveira
Hi! On 8/20/07, Charles Plessy <[EMAIL PROTECTED]> wrote: > Many thanks. Do they include the changes you made in the SVN this > morning ? No. I have uploaded the packages as you left them. The changes that I've made are very minimal and can be included on next releases. And it's time to go to be

Re: Version 2.0 of Seaview.

2007-08-23 Thread Nelson A. de Oliveira
Hi! On 8/23/07, Charles Plessy <[EMAIL PROTECTED]> wrote: > Could somebody sponsor it ? Only the upstream sources and the changelog > changed. Uploaded. I have removed Encoding=UTF-8 from the .desktop file (it was already removed on SVN). Best regards, Nelson -- To UNSUBSCRIBE, email to [EMA

Re: New upload of emboss-explorer

2007-09-26 Thread Nelson A. de Oliveira
Hi David! On 9/26/07, David Paleino <[EMAIL PROTECTED]> wrote: > Hi *, > a new upload of emboss-explorer is ready: this fixes #435991. I've already > sent > a mail to [EMAIL PROTECTED], but I don't know who the members are, nor > if someone is actively participating (I actually only know Charles

Re: New upload of emboss-explorer

2007-09-28 Thread Nelson A. de Oliveira
Hi David! On 9/28/07, David Paleino <[EMAIL PROTECTED]> wrote: > Hi Nelson, sorry for the delay (Bogofilter needs some fine-tuning ;) ) No problem ;-) > > It's missing do_cleanup.sh: > > Forgot to svn add it. It's fixed now ;) It's missing at least a "fi" closing the if in your script. Could yo

Re: New upload of emboss-explorer

2007-09-29 Thread Nelson A. de Oliveira
Hi David! Uploaded emboss-explorer. Thank you for your work! Best regards, Nelson -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: New upload for proda

2007-09-29 Thread Nelson A. de Oliveira
Hi again! On 9/29/07, David Paleino <[EMAIL PROTECTED]> wrote: > Hi all, > I believe proda is ready for a new upload. There have been a number of minor > changes, but they might deserve an upload. I will lunch now, then I'll take a look at your package. Best regards, Nelson -- To UNSUBSCRIBE,

Re: New upload for proda

2007-09-29 Thread Nelson A. de Oliveira
Hi! On 9/29/07, David Paleino <[EMAIL PROTECTED]> wrote: > Secondly, I've just noticed that proda compiled with debug flags. This made > proda a ~600K application, while with debug flags turned off, it is around > 180K. I believe it's a good improvement ;) Actually you need to build with debug sy

Re: New upload for proda

2007-09-30 Thread Nelson A. de Oliveira
Hi David! On 9/30/07, David Paleino <[EMAIL PROTECTED]> wrote: > I think it's ready for an upload. ;) It is :-) Uploaded. Best regards, Nelson -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: [med-svn] r673 - in trunk/community/website/locale: . pt pt_BR

2007-10-07 Thread Nelson A. de Oliveira
Hi Charles! On 10/7/07, Charles Plessy <[EMAIL PROTECTED]> wrote: > although I am not expert, I think that in that case, it means that we > can edit inc/locales.txt instead of duplicating the pt locale. > > http://debian-med.alioth.debian.org/inc/locales.txt Hum... I didn't know this one. Is thi

Re: Website broken

2007-10-12 Thread Nelson A. de Oliveira
Hi! On 10/12/07, David Paleino <[EMAIL PROTECTED]> wrote: > Here's what happened: when Nelson committed the pt_* translations, he modified > the permissions of the whole website. It has not been a "conscious" action, > but > a consequence of the post-commit hook. Mi scusi. Sorry for this trouble

Re: Website broken

2007-10-12 Thread Nelson A. de Oliveira
On 10/12/07, David Paleino <[EMAIL PROTECTED]> wrote: > I've added a "umask 002" line to the update-website script. This *should* > ensure the correct umask while updating the website. I'd need a test commit > from someone who didn't set his umask yet (Nelson?). In any case, if this > doesn't work

Re: Please sponsor dialign-t, needed for the meta-aligner dm_coffee.

2007-10-13 Thread Nelson A. de Oliveira
Hi Charles! On 10/13/07, Charles Plessy <[EMAIL PROTECTED]> wrote: > I prepared a package for DIALIGN-T, which is needed by the meta-aligner > functions of T-Coffee (m_coffee, dm_coffee). You can find it either in > our SVN, or on mentors.d.o: Hum... (...) gcc -Wall -g -O2 -c -o prob.o prob.c

Re: EMBOSS ready for upload to NEW.

2007-10-13 Thread Nelson A. de Oliveira
Hi! On 10/13/07, Charles Plessy <[EMAIL PROTECTED]> wrote: > Not being a DD, I still need somebody to do the upload (please use > dch-r before...). But I have resumed my work on T&S2, and I hope that I > can send it to my application manager soon. Uploading right now. Thank you, Charles! Best re

Script to verify if we are up-to-date with upstream versions

2007-11-03 Thread Nelson A. de Oliveira
Hi! Below you will see the output of a (very ugly but functional) script that I will run weekly. It will gets latest changelogs and watch files from SVN and verify if we already have the latest upstream version. Up to date packages won't be displayed. What do you think? Suggestions, critics, comm

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