eps in their team, which I think
we can all agree is where they belong).
You may have figured I would prefer option 1 above for now. I can help with
this next week.
Cheers,
Kevin -- who is at last on the same continent as you guys
---
Kevin Murray
0xA4B4EE6A
ast
> > the latest one.
> >
>
> Agreed, but I have no time for the near future; sorry.
>
>
> >
> > Kind regards
> >
> > Andreas.
> >
> > --
> > http://fam-tille.de
> >
> >
>
>
> --
> Michael R. Crusoe
> Community Engineer & Co-founder
> Common Workflow Language project
> https://impactstory.org/u/-0002-2961-9670
> michael.cru...@gmail.com
> +32 (0) 2 808 25 58
> +1 480 627 9108
---
Kevin Murray
0xA4B4EE6A
Hi Andreas,
On 15:46 20/07, Andreas Tille wrote:
> Hi Kevin,
>
> On Wed, Jul 20, 2016 at 10:48:18PM +1000, Kevin Murray wrote:
> > Hi all,
> >
> > I will see what I can do in this. Fixing up libzstd and seqan are next on my
> > list of debian things to do. PhD
hes to get them to build with
seqan 2.x shouldn't be monumentally difficult and should be qulte
upstream-able).
Cheers,
K
---
Kevin Murray
0xA4B4EE6A
their own accord and having the folks who wrote the tools do the API
transition is better for all concerned.
All in all, I think that having seqan 1.x in Stretch makes sense. Certainly, we
should deprecate it, and be proactive encouraging upstreams to migrate to 2.x,
but the burden of fixing a fe
> > might hopefully be able to help ...
> >
> > Kind regards
> >
> > Andreas.
> >
> > > [1] https://github.com/seqan/lambda
> > >
> > > > On Tue, Aug 02, 2016 at 09:10:27AM +0200, Andreas Tille wrote:
> > > >> On
4.04, and therefore the
lintian is way out of date. So I can't comment as to the correctness and
cleanliness of the package, but I've pushed my change.
Hope that helps,
Cheers,
K
---
Kevin Murray
0xA4B4EE6A
Hi Andreas,
On 16:55 06/08, Andreas Tille wrote:
> Hi Kevin,
>
> On Sat, Aug 06, 2016 at 07:49:27PM +1000, Kevin Murray wrote:
> > It appears I have got SeqAn to build. Looks as though they changed the name
> > of
> > one of their seqan-specific cmake options. I
re also old binary packages preventing a testing transition,
which I'm not sure how to deal with.
Cheers,
K
---
Kevin Murray
Hi Andreas,
On 19:15 15/11, Kevin Murray wrote:
> I will also (but haven't yet) see if I can get it to build against libssw.
Well that turned out to be far easier than I expected. I've pushed a patch that
uses libssw from debian. So let's see if this fixes the build. And we a
Hi Andreas,
On 12:13 15/11, Andreas Tille wrote:
> On Tue, Nov 15, 2016 at 07:15:03PM +1100, Kevin Murray wrote:
> > There are also old binary packages preventing a testing transition,
> > which I'm not sure how to deal with.
>
> If you want to get old package ve
Hi all,
AFAICT I think I should have fixed the issues in skbio. I've filed an ROM bug,
and updated to latest upstream. Could I please get an upload and see if the
test failure goes away?
Cheers,
Kevin
---
Kevin Murray
st
update for this exact issue, and I added them.
Happy hacking all!
Cheers,
K
---
Kevin Murray
signature.asc
Description: PGP signature
; data are welcome for sure.
All seems well with a simple workflow of mine, so it *should* all work fine.
Fingers crossed!
Happy sprinting all!
Cheers,
K
---
Kevin Murray
signature.asc
Description: PGP signature
ence tarball (having
imported the git tree into the Debian repository)? I'm still a little confused
about the process, given that the upstream source is in the form of a git
repository.
Thanks!
Cheers,
Kevin
---
Kevin Murray
GPG pubkey: http://www.kdmurray.id.au/static/A4B4EE6A.asc
FPR: 6
something
similar with the README.html which we now generate, to avoid a build-dep on
python-markdown?
Cheers,
Kevin
---
Kevin Murray
GPG pubkey: http://www.kdmurray.id.au/static/A4B4EE6A.asc
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Kevin Murray
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or hijacking the thread.
I'm keen to get a bit further involved in Debian in general, and Debian Med in
specific. Is there some list you have of "easy to fix" bugs which you would
like assistance with? As a PhD student I don't have heaps of time, but enough
to fix a bug or two
, and will keep you posted.
On a separate note, what do you think of the idea of having a different binary
package for each of the seqan applications, as opposed to one big seqan-apps.
Cheers,
K
---
Kevin Murray
GPG pubkey: http://www.kdmurray.id.au/static/A4B4EE6A.asc
FPR: 656C 0632 1EAB 2C3F 3837 9767 17C2 8EB1 A4B4 EE6A
h
> > my kids at this date.
>
> I guess we need at least two new sprint members to replace you ;-) but
> as always family has preference before volunteer work.
>
Speaking of new sprint members, I'm hoping to attend. Haven't booked tickets
but am 90% sure I'
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