New package r-cran-nmf

2016-04-09 Thread Alba Crespi
Hi, I pushed a new package r-cran-nmf to alioth, but there are still several dependencies that need to be packaged (I plan to work on them soon). Regards, Alba

Re: New package r-cran-nmf

2016-04-10 Thread Alba Crespi
Hi Andreas, Fine. I noticed that you probably want to add the packages specified in > Build-Depends to the Depends. Unfortunately this is not resolved by > R:Depends. > I've done that and I pushed it. Thanks for telling me! :) Regards, Alba

r-cran-registry

2016-04-11 Thread Alba Crespi
Dear Andreas, I saw you changed the version of the package r-cran-registry. As I understand it the upstream version in 0.3 (see https://cran.r-project.org/web/packages/registry/), and I already added -1 for the debian version. I think the new version 0.3-1-1 is not correct. Regards, Alba

pkgmaker copyright

2016-07-04 Thread Alba Crespi
Dear Renaud Gaujox, I am Alba Crespi and I am writing to you on behalf of the Debian Med team (cc in this email). The Debian Med project maintains Debian packages for software associated with medicine, pre-clinical research, and life sciences. I am currently creating new packages to add pkgmaker

Re: [r-cran-rngtools] 01/01: Cleaned debian directory

2016-07-05 Thread Alba Crespi
Hi Andreas, > So if you could double check r-cran-registry, and r-cran-rngtools are ok to > > be uploaded. > > I've uploaded r-cran-registry. > I added some missing (Build-)Depends to r-cran-rngtools. Since this > Depends from pkgmaker we need to upload this first. > Thanks! > > Then r-cran

Re: pkgmaker copyright

2016-07-05 Thread Alba Crespi
opyright statements in all files, > and only mention the type of license in the DESCRIPTION file, which I > understand is not compliant. > > Can this wait until I come back end of July? > Thanks. > > Bests, > Renaud > > > > On Monday, 04 July 2016, Alba Crespi wrote:

Bug#861182: ITP: python-ete3 -- Python toolkit for phylogenetic tree manipulation and visualisation.

2017-04-27 Thread Alba Crespi
Package: wnpp Severity: wishlist Owner: Alba Crespi * Package name: python-ete3 Version : 3.0.0b35 Upstream Author : Jaime Huerat-Cepas , François Serra * URL : https://github.com/etetoolkit/ete * License : GPL-3.0 Programming Lang: Python Description

Re: Bug#861182: ITP: python-ete3 -- Python toolkit for phylogenetic tree manipulation and visualisation.

2017-04-27 Thread Alba Crespi
x27;ve bounced it to the Debian Med list and I guess > you intend to maintain it in Debian Med team where sponsoring is > granted. > > Kind regards > > Andreas. > > On Tue, Apr 25, 2017 at 02:42:52PM +0100, Alba Crespi wrote: > > Package: wnpp > > Sever

Re: ITP: r-cran-igraph -- GNU R package for igraph

2015-05-14 Thread Alba Crespi
Hi Andreas, > > I think at this part of the policy are the helpful hints: > > > > > >https://debian-med.alioth.debian.org/docs/policy.html#git-tips > > > > > > If you have some more specific question where you might get struck > please > > > give more details where you specifically might need

Re: [MoM] r-cran-fastmatch: last polishing

2015-05-18 Thread Alba Crespi
Dear Andreas, 2015-05-18 19:58 GMT+01:00 Andreas Tille : > Please `gbp pull` to fetch the changes I did. > I've now pulled those changes. > Otherwise the package is fine and thus I uploaded it. Currently new > queue processing is quite slow and thus I can not tell when it will be > accepted i

Re: [MoM] r-cran-nnls: please fix copyright

2015-05-18 Thread Alba Crespi
2015-05-18 20:04 GMT+01:00 Andreas Tille : > I had a look into your commits for r-cran-nnls. I noticed that there > is a file inst/COPYRIGHTS specifying copyright information for the > Thanks -- I'd forgotten to add entries for that, but have done it now. > Moreover I would like you to do > >

Re: [MoM] r-cran-nnls: please fix copyright

2015-05-18 Thread Alba Crespi
Hi Andreas, 2015-05-18 21:21 GMT+01:00 Andreas Tille : > > A missing Copyright field > >missing-field-in-dep5-copyright > There is no copyright holder, since it's public domain! I can list the author there, but that's not really correct. > Duplicated license names dep5-copyright-license-

Re: [MoM] r-cran-nnls: please fix copyright

2015-05-20 Thread Alba Crespi
Hi Andreas 2015-05-19 7:08 GMT+01:00 Andreas Tille : > Hi Alba, > > On Mon, May 18, 2015 at 10:43:58PM +0100, Alba Crespi wrote: > > 2015-05-18 21:21 GMT+01:00 Andreas Tille : > > > > > A missing Copyright field > > > > > >missing-field-in-dep

Re: [MoM] r-cran-nnls: please fix copyright

2015-05-21 Thread Alba Crespi
Hi Andreas, 2015-05-20 14:22 GMT+01:00 Andreas Tille : > > That's a quite successful MoM project with currently two uploads. > Thanks for your contribution and lets hope that new processing speed > will increase a bit > Now 3. I've just pushed r-cran-phangorn. I hope I'm not giving you too much

Re: [MoM] r-cran-nnls: please fix copyright

2015-05-21 Thread Alba Crespi
Hi Andreas, 2015-05-21 14:55 GMT+01:00 Andreas Tille : > > There are some missing dependencies: > > ... > ERROR: dependencies 'ape', 'quadprog', 'igraph', 'Matrix', 'nnls' are not > available for package 'phangorn' > > which you stumble upon when building in a chroot. We know that ipraph > and

Re: [MoM] r-cran-nnls: please fix copyright

2015-05-21 Thread Alba Crespi
Hi Andreas, 2015-05-21 18:15 GMT+01:00 Andreas Tille : > Hi Alba, > > On Thu, May 21, 2015 at 04:39:28PM +0100, Alba Crespi wrote: > > > ERROR: dependencies 'ape', 'quadprog', 'igraph', 'Matrix', 'nnls' are > not > > &g

Re: [MoM] r-cran-nnls: please fix copyright

2015-05-22 Thread Alba Crespi
Hi Andreas, 2015-05-21 20:48 GMT+01:00 Andreas Tille : > Hi Alba, > > > I've added in them in the Build-Depends. In the Depends sections, as far > as > > I understand from the way I've done it, it gets the dependencies > > automatically when building it. > > You assume because of "${R:Depends}"?

r-cran-fastmatch

2015-06-04 Thread Alba Crespi
Hello, I've changed the copyright file on the package r-cran-fastmatch as the ftp-master suggested. (Everything else should be fine as Andreas checked the package before the previous upload.) Could somebody rebuild it and upload, please? Cheers, Alba

Re: [ftpmas...@ftp-master.debian.org: r-cran-phangorn_1.99-13-1_amd64.changes is NEW]

2015-07-02 Thread Alba Crespi
Hi Andreas, 2015-07-02 8:12 GMT+01:00 Andreas Tille : > Hi Alba, > > I took the freedom to finalise the package r-cran-phangorn that you > started. Thank you very much! :) > Finally r-cran-igraph was accepted yesterday and thus the > package can be built. I added a file README.source since f

new upstream r-cran-phangorn

2015-08-21 Thread Alba Crespi
Hello, I updated the new upstream version for r-cran-phangorn. I realised that I my e-mail in some commits is wrong, does anybody know how can I fix it? otherwise, I guess is too bad. Cheers, Alba