Re: Help needed to finalise the oneTBB migration of flexbar

2023-01-29 Thread Andreas Tille
Am Sat, Jan 28, 2023 at 09:06:43AM +0100 schrieb Andreas Tille: > Am Fri, Jan 27, 2023 at 11:12:10PM +0100 schrieb Étienne Mollier: > > favor of funtion tbb::parallel_pipeline). I'm a bit dry for the > > moment and will have the weekend busy, so if someone wants to > > take over from here, please

Remaining numpy 1.24 issues on 32bit architectures

2023-01-29 Thread Andreas Tille
Hi, I think there are some remaining issues with numpy 1.24 migration on 32 bit architectures[1]. Here is one example: _ TestSequence.test_getitem_with_slice_has_positional_metadata _ self = def test_getitem_with_slice_has_positional_metadata(self): s = "0123456789

Re: Thanks for helping sra-sdk 3 migrate!

2023-01-29 Thread Paul Gevers
Hi Aaron, On 26-01-2023 19:15, Paul Gevers wrote: You're welcome. Next time in similar situations, don't hesitate to contact us. I don't think our tools could have handled this situation without interference. britney2 (our migration software) still refuses to let sra-sdk migrate and replace

Re: Thanks for helping sra-sdk 3 migrate!

2023-01-29 Thread Andreas Tille
Am Sun, Jan 29, 2023 at 08:38:22PM +0100 schrieb Paul Gevers: > > britney2 (our migration software) still refuses to let sra-sdk migrate and > replace ngs-sdk. I think that's because with ngs-sdk, paleomix can be build > and installed on ppc64el, while with sra-sdk it can't. I'll add a hint to > a

Re: Thanks for helping sra-sdk 3 migrate!

2023-01-29 Thread Aaron M. Ucko
Andreas Tille writes: >> paleomix (probably by asking for it's removal on ppc64el and mips64el as I >> think they FTBFS there now and can't be installed either). > > ACK, perfectly fine to remove paleomix on anything than amd64. Ah, yeah, I completely overlooked htsjdk's reverse dependencies, oo