Advice needed: building new gatk-bwamem-jni against another version of bwa

Hello everyone, I need your advice on a packaging issue I am meeting right now. I am in the course of packaging gatk-bwamem-jni [0], providing a native interface which allows one to use bwa (Debian packaged [1]) from Java code. Fine. But the upstream of gatk-bwamem-jni relies on a version of

Re: Advice needed: building new gatk-bwamem-jni against another version of bwa

On 3/13/22 8:05 PM, Pierre Gruet wrote: What should I do? My proposal would be to design a multiple upstream tarball for gatk-bwamem-jni: original one + the sources at the tip of the Apache2 branch of bwa.> It would build a libbwa.a lib which would not be installed in /usr/lib, but in a privat

Re: Advice needed: building new gatk-bwamem-jni against another version of bwa

Hi Nilesh, Thanks for the quick answer. Your advice is much appreciated, as always. Le 13/03/2022 à 15:46, Nilesh Patra a écrit : On 3/13/22 8:05 PM, Pierre Gruet wrote: What should I do? My proposal would be to design a multiple upstream tarball for gatk-bwamem-jni: original one + the sources

Re: Advice needed: building new gatk-bwamem-jni against another version of bwa

Hi Pierre, On 2022-03-13 16:35, Pierre Gruet wrote: > My proposal would be to design a multiple upstream tarball for > gatk-bwamem-jni: original one + the sources at the tip of the Apache2 > branch of bwa. It would build a libbwa.a lib which would not be > installed in /usr/lib, but in a private d