Your message dated Sat, 19 Feb 2022 10:00:09 +
with message-id
and subject line Bug#996993: fixed in biojava5-live 5.4.0+dfsg-1
has caused the Debian Bug report #996993,
regarding ITP: biojava5-live -- Java API to biological data and applications
(version 5)
to be marked as done.
This means
Your message dated Sat, 19 Feb 2022 11:00:10 +
with message-id
and subject line Bug#1004152: fixed in malt 0.5.2-1
has caused the Debian Bug report #1004152,
regarding ITP: malt -- sequence alignment and analysis tool to process
sequencing data
to be marked as done.
This means that you claim
Hi Rebecca,
I've checked the situation of python3-drmaa:
Autopkgtest of python3-drmaa fails with:
OSError: /usr/lib/x86_64-linux-gnu/libjemalloc.so.2: cannot allocate memory
in static TLS block
which is caused by bug #951704 (tagged wontfix).
Drmaa does not seem to be maintained upstream an
Hi,
probabel fails its test suite for some architectures[1]. I reported
this upstream and got the response[2]
@lckarssen Shall we ask if they remove Probabel from the Debian project as a
package? Since there is no workforce to maintain the software, it is better not
to use it. ( so also distri
The documentation says:
https://github.com/snakemake/snakemake/blob/main/docs/tutorial/additional_features.rst#cluster-execution
https://github.com/snakemake/snakemake/blob/main/docs/executing/cluster.rst
I don't know how up to date this is, but the code to use drmaa is still
there.
snakemake a
Andrius Merkys writes:
> It depends whether you need simple protein FASTA sequences or
> alignments. You may find simple sequences in PDB, for example [1], go to
> "Download Files" and FASTA format is just there. AFAIR, PDB data is
> freely distributable.
Likewise for everything in GenBank/GenPe
Hi Olivier,
I'm writing you on behalf of the Debian Med team which is maintaining
FastQTL for Debian.
I just realised that the original homepage at sourceforge[1] does not
work any more. While I've found modified forks on Github I would like
to hear your opinion what might be the best source to
Am Sat, Feb 19, 2022 at 09:23:16PM + schrieb Rebecca N. Palmer:
> The documentation says:
> https://github.com/snakemake/snakemake/blob/main/docs/tutorial/additional_features.rst#cluster-execution
> https://github.com/snakemake/snakemake/blob/main/docs/executing/cluster.rst
> I don't know how u
Hi,
I think I need some cmake help for ncbi-vdb. In former versions
ncbi-vdb came with a hand-crafted build system. Now cmake is provided
alternatively which is a great progress IMHO since that hand-crafted
system always created issues for every new version. I started using
cmake but its not fi
Hi Steffen,
I realised that
https://sourceforge.net/projects/autodocksuite/files/
has no files any more. Could you shade some light into what we should
package and what we should rather drop? Does it help to keep the
current autodocksuite code inside Debian (but provide a fake watch file
to
Hello,
On Sun, 20 Feb 2022, 09:40 Andreas Tille, wrote:
> I realised that
>
>https://sourceforge.net/projects/autodocksuite/files/
>
> has no files any more. Could you shade some light into what we should
> package and what we should rather drop? Does it help to keep the
> current autodock
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