Re: New upstream version of drop-seq does not build

2021-10-13 Thread Pierre Gruet
Hi Andreas, Le 13/10/2021 à 07:38, Andreas Tille a écrit : Hi Pierre, Am Tue, Oct 12, 2021 at 09:13:49PM +0200 schrieb Pierre Gruet: Cool. I also think we should pimp biojava4 watch file to return the last upstream source of biojava4 and than also provide biojava5. We will soon see upstreams

libcifpp

2021-10-13 Thread Maarten L. Hekkelman
Yes, libcifpp is still in the queue @ftp-master. But I uploaded a new package to salsa anyway. This one brings a new upstream version and also includes the new update mechanism as proposed here. Would be nice if anyone with more power than I have is willing to upload this package, as soon as i

sra-sdk is lacking libngs

2021-10-13 Thread Andreas Tille
Hi Aaron, I ping you personally since you always was of great help with all the ncbi stuff. I updated sra-sdk in Git to something that should be close to building - but than I realised: gcc -static-libgcc -o /build/sra-sdk-2.11.2+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-sql.2

Re: Autopkgtest fails in new version of shasta

2021-10-13 Thread Nilesh Patra
On 10/11/21 3:17 PM, Andreas Tille wrote: Hi Shayan, I tried to upgrade shasta to the latest upstream version. Unfortunately the autopkgtest fails with: [...] Can you (or somebody else) have a look? Hi, I have fixed this, and pushed my changes to salsa. However, lintian complains about s

Re: libcifpp

2021-10-13 Thread Andreas Tille
Hi Maarten, Am Wed, Oct 13, 2021 at 03:31:02PM +0200 schrieb Maarten L. Hekkelman: > Yes, libcifpp is still in the queue @ftp-master. But I uploaded a new > package to salsa anyway. This one brings a new upstream version and also > includes the new update mechanism as proposed here. > > Would be

Re: sra-sdk is lacking libngs

2021-10-13 Thread Aaron M. Ucko
Andreas Tille writes: > Is libngs a new project or is it possible that I failed to update > ncbi-vdb or some other related project properly and those sources also > contain the missing code? Please try updating ngs-sdk to 2.11.2 -- AFAICT, it's still at 2.10.9. I'm not entirely sure that update