Re: MRtrix3

Le 03/03/2021 à 20:13, Andreas Tille a écrit : On Wed, Mar 03, 2021 at 04:45:02PM +0100, Julien Lamy wrote: Would the following solution be acceptable per Debian policy: - Keep dirsplit and its dependency gen_scheme installed in usr/lib/mrtrix3/bin (current situation) - Install everything else

Re: MRtrix3

On Thu, Mar 04, 2021 at 12:32:30PM +0100, Julien Lamy wrote: > Le 03/03/2021 à 20:13, Andreas Tille a écrit : > > Just a slight hint that there is a Blends-workaround for name > > space conflicts which is described for instance here: > > > > > > https://salsa.debian.org/med-team/plink/-/blob

Re: MRtrix3

On Thu, 4 Mar, 2021, 5:16 pm Andreas Tille, wrote: > On Thu, Mar 04, 2021 at 12:32:30PM +0100, Julien Lamy wrote: > > Le 03/03/2021 à 20:13, Andreas Tille a écrit : > > > Just a slight hint that there is a Blends-workaround for name > > > space conflicts which is described for instance here: > >

Bug#984477: marked as done (libbio-variation-perl: missing Breaks+Replaces: bioperl (<< 1.7.3))

Your message dated Thu, 04 Mar 2021 13:18:23 + with message-id and subject line Bug#984477: fixed in libbio-variation-perl 1.7.5-2 has caused the Debian Bug report #984477, regarding libbio-variation-perl: missing Breaks+Replaces: bioperl (<< 1.7.3) to be marked as done. This means that you c

Re: "Entry: NA" in debian/upstream/metadata

On Wednesday, March 03, 2021 11:39:41 AM Matus Kalas wrote: > P.S.: Could you please leave all the contents in when replying to the > thread, so that others can reply to previously mentioned points without > having to read every single email in the thread and possibly breaking > linearity of it? I

Re: "Entry: NA" in debian/upstream/metadata

Hi Charles, On 2021-03-04 07:06, Charles Plessy wrote: > how about YAML's null value for entries for which it was confirmed that > the information does not exist ? This was my initial idea. I do not know much about YAML, but at least Perl YAML implementations see no difference between different w

Re: Outreachy project: complete workflows of tools

Dear Tássia, On Wed, Mar 03, 2021 at 03:21:18PM -0800, Tassia Camoes Araujo wrote: > Hi Debian-Med team! > > -- this should be a reply to the sprint report, sorry I was not in the > list at the moment -- > > One of the topics we discussed was to have an additional Outreachy > intern to work on c

Re: Outreachy project: complete workflows of tools

On 04/03/2021 16:54, Andreas Tille wrote: [...] If I understood you correctly your question to Tony was whether he might like to volunteer to support drafting an Outreachy proposal. Guessing from Tony's response to your mail this was not totally clear to him. Hi, Andreas. You're right, I was

Re: "Entry: NA" in debian/upstream/metadata

Am 04.03.21 um 17:12 schrieb Andrius Merkys: > Hi Charles, > > On 2021-03-04 07:06, Charles Plessy wrote: >> how about YAML's null value for entries for which it was confirmed that >> the information does not exist ? > This was my initial idea. I do not know much about YAML, but at least > Perl Y

Re: Outreachy project: complete workflows of tools

Am 04.03.21 um 22:09 schrieb Tony Travis: > On 04/03/2021 16:54, Andreas Tille wrote: >> [...] >> If I understood you correctly your question to Tony was whether he might >> like to volunteer to support drafting an Outreachy proposal.  Guessing >> from Tony's response to your mail this was not to

Re: guix-based installation of pigx-rnaseq - works

Hi, On Wed, 03 Mar 2021 at 20:45, Steffen Möller wrote: >> What would be nice for Debian instead of >> ? > The updates of Debian's packages and those of guix are not synchronized. > And once something is in a regular Debian release, the Debia

Re: guix-based installation of pigx-rnaseq - works

Hi Pjotr, On Wed, 03 Mar 2021 at 22:16, Pjotr Prins wrote: > I love Debian, but Guix packages and containers are the cats whiskers! > It is brilliant to have them both. I have no need for conda. Now this works: # apt install guix $ guix install hello and since Vagrant sent the announce on

Re: guix-based installation of pigx-rnaseq - works

Am 05.03.21 um 01:18 schrieb zimoun: > Hi Pjotr, > > On Wed, 03 Mar 2021 at 22:16, Pjotr Prins wrote: > >> I love Debian, but Guix packages and containers are the cats whiskers! >> It is brilliant to have them both. I have no need for conda. > Now this works: > > # apt install guix > $ guix

Upstream permission needed to package machine learning preconditions (Was: guix-based installation of pigx-rnaseq - works)

Hi On Fri, Mar 05, 2021 at 01:18:37AM +0100, zimoun wrote: > > Because packages are really hard to package (I have in mind Machine > Learning stuff) and they will not be included soon, IMHO. Then I could > remove my Guix on the top of Debian and simply have Debian inside > Guix. ;-) Apropos har