Re: mafft [was Re: VIP]

2020-09-29 Thread Andreas Tille
Hi Tony, thanks for your trust and reaching out here. Since it seems to be a complex problem its probably sensible to open a bug report also for the Debian package (and please be so kind to refer with explicitly links to the bug you was talking about). I also think that the issue should be repor

Re: Beast-mcmc2 upgrade is missing class net.jsign.JsignTask

2020-09-29 Thread Pierre Gruet
Hi Andrius, Le 29/09/2020 à 07:57, Andrius Merkys a écrit : > Hi Pierre, > > On 2020-09-28 22:47, Pierre Gruet wrote: >> Thanks for your advice! Nevertheless, this seems to rank before the >> current version number, as >> >> echo "2.6.3+dfsg-2,2.6.3+dfsg1-1" | tr ',' '\n' | sort --version-sort >>

Re: Beast-mcmc2 upgrade is missing class net.jsign.JsignTask

2020-09-29 Thread Andrius Merkys
Hi Pierre, On 2020-09-29 10:54, Pierre Gruet wrote: > Thank you for pointing this out! I should have referred to the > Developer's reference as i have just seen dpkg --compare-versions is > presented there. Glad this helped! This was not immediately evident for me also :) Best, Andrius

[RFS] dcm2niix

2020-09-29 Thread Nilesh Patra
gbp clone --pristine-tar https://salsa.debian.org/med-team/dcm2niix OR dcut dm --uid npatra...@gmail.com --allow dcm2niix Thanks and Regards Nilesh

Re: [RFS] dcm2niix

2020-09-29 Thread Andreas Tille
On Tue, Sep 29, 2020 at 06:10:30PM +0530, Nilesh Patra wrote: > dcut dm --uid npatra...@gmail.com --allow dcm2niix Done. Thanks for your work on this, Andreas. -- http://fam-tille.de

Re: Fwd: Re: [MoM] ampl-netlib-solvers

2020-09-29 Thread Andrei Rozanski
Dear Andreas, On 9/28/20 10:00 PM, Andrei Rozanski wrote: Hi Andreas, On September 28, 2020 21:35:07 Andreas Tille wrote: Hi Andrei, On Mon, Sep 28, 2020 at 09:20:11PM +0200, Andrei Rozanski wrote: Its definitely OK.  I do not think whether there is any "good practice" to work around

Re: [RFS] hyphy update 2.5.18

2020-09-29 Thread Étienne Mollier
Hi Andreas, Andreas Tille, on 2020-09-29 08:48:00 +0200: > On Mon, Sep 28, 2020 at 10:21:04PM +0200, Étienne Mollier wrote: > > namely fix_brace_mismatch.patch. > > In an early version I think I misplaced the missing brace, but > > it did not result in a build error. > > I think having a comment

Re: [RFS] hyphy update 2.5.18

2020-09-29 Thread Andreas Tille
Hi Étienne, great. I uploaded as is. Thanks a lot for your work on this package. Kind regards Andreas. PS: In case you feel competent for a Python3.6 -> Python3.8 port you might like to have a look at https://github.com/qiime2/qiime2/issues/520#issuecomment-700809456

Re: Fwd: Re: [MoM] ampl-netlib-solvers

2020-09-29 Thread Andreas Tille
Dear Andrei, On Tue, Sep 29, 2020 at 03:31:21PM +0200, Andrei Rozanski wrote: > > > I have worked on a few changes. Can you please check if it make sense? > > https://salsa.debian.org/med-team/ampl-netlib-solvers/-/blob/master/debian/patches/fix-makefile-shared-lib.patch I think this makes sens