Re: PIQUE packaging (Was: request for r-cran packages)

2020-07-20 Thread Tony Travis
On 03/07/2019 09:18, Tony Travis wrote: On 02/07/2019 15:08, Andreas Tille wrote: Hi Tony, On Wed, Mar 20, 2019 at 04:15:11PM +0100, Tony Travis wrote:     2. Is there any description of PIQUE that could be used as long    description for the package.  I've checked doc/pique_manual.odt    

Re: PIQUE packaging (Was: request for r-cran packages) [correction]

2020-07-20 Thread Tony Travis
On 20/07/2020 10:46, Tony Travis wrote: [...] PIQUE is a software pipeline for performing genome wide association studies (GWAS). The main function of PIQUE is to provide ‘convenience’ wrappers that allow users to perform GWAS using the popular program EMMAX (Kang et al., 2010) without the nee

Re: PIQUE packaging (Was: request for r-cran packages) [correction]

2020-07-20 Thread Andreas Tille
On Mon, Jul 20, 2020 at 11:33:18AM +0100, Tony Travis wrote: > On 20/07/2020 10:46, Tony Travis wrote: > > [...] > > PIQUE is a software pipeline for performing genome wide association > > studies (GWAS). The main function of PIQUE is to provide ‘convenience’ > > wrappers that allow users to perfor

[RFS] python-geneimpacts

2020-07-20 Thread Nilesh Patra
Hi, I've added autopkgtests for python-geneimpacts - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/python-geneimpacts OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Than

semi-RFS: xenium - good enough for me (at the moment)

2020-07-20 Thread Steffen Möller
Hello, There is more to the package than I managed to investigate:  - How is the benchmarking properly invoked? It builds at least.  - How is the google test properly built/performed? Better have a look at azure-pipelines.yml  - Why does the build fail over detecting pthread bits when I enable the

Re: [RFS] python-geneimpacts

2020-07-20 Thread Steffen Möller
allowed On 20.07.20 19:09, Nilesh Patra wrote: > Hi, > I've added autopkgtests for python-geneimpacts - builds with passing > tests. > I've pushed my changes to the team-repo[1] > Please: > > gbp clone --pristine-tar > https://salsa.debian.org/med-team/python-geneimpacts >