Re: graphmap2, gindex, seqlib & some more friends

2020-06-21 Thread Andreas Tille
Hi Antoni, On Sun, Jun 21, 2020 at 06:29:26AM +, Antoni Villalonga wrote: > Hi, > > I've been looking at that "ecosystem" as you already have done. > I think the main purpose of med-team is to get a working "graphmap2" binary > package. That's correct. > Upstream compilation script is stati

Re: graphmap2, gindex, seqlib & some more friends

2020-06-21 Thread Antoni Villalonga
On Sun, Jun 21, 2020 at 09:15:52AM +0200, Andreas Tille wrote: > Hi Antoni, > > On Sun, Jun 21, 2020 at 06:29:26AM +, Antoni Villalonga wrote: > > Hi, > > > > I've been looking at that "ecosystem" as you already have done. > > I think the main purpose of med-team is to get a working "graphmap

Re: graphmap2, gindex, seqlib & some more friends

2020-06-21 Thread Andreas Tille
Hi Antoni, On Sun, Jun 21, 2020 at 07:36:42AM +, Antoni Villalonga wrote: > > I'm not sure whether I understand you correctly. So your suggestion is > > not to build the actual sources but rather ship the sources in an > > Architecture: all package (as if packaging kind of header only library

[Help Needed] pyranges

2020-06-21 Thread Nilesh Patra
Hi, pyranges finally builds now with passing tests - however there are a few issues as lintian reports. Processing triggers for libc-bin (2.30-8) ... E: pyranges source: source-is-missing docs/libs/gitbook-2.6.7/js/app.min.js E: pyranges source: source-is-missing docs/libs/gitbook-2.6.7/js/lunr.js

Re: [Help Needed] pyranges

2020-06-21 Thread Andreas Tille
Hi Nilesh, On Sun, Jun 21, 2020 at 02:14:25PM +0530, Nilesh Patra wrote: > Hi, > pyranges finally builds now with passing tests - however there are a few > issues as lintian reports. > > Processing triggers for libc-bin (2.30-8) ... > E: pyranges source: source-is-missing docs/libs/gitbook-2.6.7/

Re: [Help Needed] pyranges

2020-06-21 Thread Nilesh Patra
Hi noticed that there's a new upstream release just 2 days ago which is after when Steffen started to work on the Debian package. And looks like they cleaned their mess, I updated to latest upstream now it should be okay :-) On Sun, 21 Jun 2020, 16:08 Andreas Tille, wrote: > Hi Nilesh, > > On S

Re: [Help Needed] pyranges

2020-06-21 Thread Andreas Tille
On Sun, Jun 21, 2020 at 04:32:03PM +0530, Nilesh Patra wrote: > Hi noticed that there's a new upstream release just 2 days ago which is > after when Steffen started to work on the Debian package. > > And looks like they cleaned their mess, I updated to latest upstream now it > should be okay :-)

Re: [Help Needed] pyranges

2020-06-21 Thread Nilesh Patra
> > Please push :-) > Done and on building w/o tests - everything clean. Now building with tests - the tests are too heavy. Shall file an ITP and send RFS when it finishes (hopefully) successfully. > >

Re: [Help Needed] pyranges

2020-06-21 Thread Andreas Tille
On Sun, Jun 21, 2020 at 05:12:58PM +0530, Nilesh Patra wrote: > > > > Please push :-) > > Done and on building w/o tests - everything clean. > Now building with tests - the tests are too heavy. Yep. Need to switch to another machine. ;-) > Shall file an ITP and send RFS when it finishes (hope

Re: [Help Needed] pyranges

2020-06-21 Thread Nilesh Patra
On Sun, 21 Jun 2020 at 17:43, Andreas Tille wrote: > On Sun, Jun 21, 2020 at 05:12:58PM +0530, Nilesh Patra wrote: > > > > > > Please push :-) > > > > Done and on building w/o tests - everything clean. > > Now building with tests - the tests are too heavy. > > Yep. Need to switch to another mac

Re: [Help Needed] pyranges

2020-06-21 Thread Steffen Möller
I can help with an upload. On 21.06.20 16:48, Nilesh Patra wrote: On Sun, 21 Jun 2020 at 17:43, Andreas Tille mailto:ti...@debian.org>> wrote: On Sun, Jun 21, 2020 at 05:12:58PM +0530, Nilesh Patra wrote: > > > > Please push :-) > > Done and on building w/o tests - everyth

Any idea whether latest version of pbbam is 1.0.7 or rather 1.3.0 (Was: Bug#959643)

2020-06-21 Thread Andreas Tille
Hi Adrian, On Sun, Jun 21, 2020 at 07:13:25PM +0300, Adrian Bunk wrote: > On Wed, May 27, 2020 at 02:06:40PM +1200, Michael Hudson-Doyle wrote: > > FWIW there is a new release (1.0.7) available and that seems to fix this > > failure (in Ubuntu, anyway). > > Andreas, after looking at the sources I

Re: [Help Needed] pyranges

2020-06-21 Thread Andreas Tille
On Sun, Jun 21, 2020 at 06:40:57PM +0200, Steffen Möller wrote: > I can help with an upload. Please wait. Current packaging has E: python3-pyranges: python-module-has-overly-generic-name usr/lib/python3/dist-packages/tests/__init__.py (tests) which has the reason that the tests were moved a

Re: mindthegap_2.2.0-1_amd64.changes REJECTED

2020-06-21 Thread Andreas Tille
Hi Shayan, On Sun, Jun 21, 2020 at 05:52:01PM +0100, Shayan Doust wrote: > Please check and upload. Uploaded. I'd recommend replying to the original reject mail. May be that helps to speed up passing new queue. Thanks for your work on this Andreas. -- http://fam-tille.de