Re: RFS: indelible

Hi Pranav, Wow, you have quite the bash skills. I can't run things locally at the moment, but I think it looks fine. Fingers crossed, it works consistently across architectures. Can s.o. please sponsor an upload? Best, Fabian On 11.06.20 23:51, Pranav Ballaney wrote: > Hi Fabian, > I added log

Videoconference today Friday 2020-06-12 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)))

Hi, for those who would like to join our next videomeeting it will happen at https://www.timeanddate.com/worldclock/fixedtime.html?msg=Debian+CoViD-19+Biohackathon+Video+Conference&iso=20200612T20&p1=37&ah=1 As last week we will use https://jitsi.debian.social/DebianMedCovid19

[RFS] vsearch

Hi, I've added autopkgtests to vsearch and a few other small fixes. Builds with passing tests in a clean chroot. Needs review and sponsorship. https://salsa.debian.org/med-team/vsearch Regards, Nilesh

Re: RFS: python-biopython

I am at it - do you mind me adding you to the list of maintainers? Best, Steffen On 11.06.20 23:54, Étienne Mollier wrote: Greetings, While working on #960756[1] affecting src:python-biopython[2] on 32bit architecture CPUs, uscan caught a newer version of the library. So I took the liberty o

RFS: Statistics::PCA

Greetings, Étienne Mollier, on 2020-05-19 21:46:25 +0200: > - libstatistics-pca-perl > - libmath-matrixreal-perl > - libmath-cephes-perl, [...] With the recent inclusion of packages libmath-matrixreal-perl and libmath-cephes-perl in Debian, putting the package libstatistics-pca-perl in good

Re: RFS: python-biopython

Hi Steffen, Steffen Möller, on 2020-06-12 18:31:57 +0200: > I am at it - do you mind me adding you to the list of maintainers? I suppose you meant the Uploaders field ? Sure, if it helps. Kind Regards, -- Étienne Mollier Fingerprint: 5ab1 4edf 63bb ccff 8b54 2fa9 59da 56fe fff3 882d Help fi

Re: RFS: python-biopython

On 12.06.20 18:39, Étienne Mollier wrote: Hi Steffen, Steffen Möller, on 2020-06-12 18:31:57 +0200: I am at it - do you mind me adding you to the list of maintainers? I suppose you meant the Uploaders field ? Sure, if it helps. ;) it helped in the past - also @Pranav and @Nilesh, you have

PhyML error - does that ring any bell? Re: RFS: python-biopython

Hello, I need to thank you for this update. I had not looked at BioPython for a lnnggg time. Pretty impressive how it all developed. I found this Bio.PDB.mmtf docstring test ... skipped, missing Python dependency Bio.PDB.mmtf.DefaultParser docstring test ... skipped, missing Python depen

Re: RFS: Statistics::PCA

Hi Étienne, On Fri, Jun 12, 2020 at 10:07 PM Étienne Mollier wrote: > With the recent inclusion of packages libmath-matrixreal-perl > and libmath-cephes-perl in Debian, putting the package > libstatistics-pca-perl in good shape has become quite easy. > Statistics::PCA is available on Salsa and re

Re: Videoconference today Friday 2020-06-12 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)))

Thank you Andreas for announcing the meeting, and thanks to the attendees for their participation. Our meeting notes are at https://storm.debian.net/shared/6NfKT87njAmCg3tr_uhkE2Qp9SQhVxy8mwD1fQUzfMy On Fri, Jun 12, 2020 at 1:07 PM Andreas Tille wrote: > Hi, > > for those who would like to join

Re: RFS: indelible

Uploaded. Thanks to you both for your work on this, Andreas. On Fri, Jun 12, 2020 at 09:09:35AM +0200, Fabian Klötzl wrote: > Hi Pranav, > > Wow, you have quite the bash skills. I can't run things locally at the > moment, but I think it looks fine. Fingers crossed, it works > consistently across

Re: RFS: cluster3

Uploaded, thanks for your work on this, Andreas. On Fri, Jun 12, 2020 at 10:41:08AM +0530, Pranav Ballaney wrote: > Hi, > I've added reference data and autopkgtests to cluster3. All tests pass in a > clean chroot. Please review and sponsor. > https://salsa.debian.org/med-team/cluster3 > > Regards

Re: [RFS] vsearch

Uploaded. Thanks for your work on this, Andreas. On Fri, Jun 12, 2020 at 05:08:38PM +0530, Nilesh Patra wrote: > Hi, > I've added autopkgtests to vsearch and a few other small fixes. Builds with > passing tests in a clean chroot. > Needs review and sponsorship. > > https://salsa.debian.org/med-t

Re: RFS: bppsuite

Uploaded. Thanks for your work on this, Andreas. On Fri, Jun 12, 2020 at 06:02:13AM +0530, Pranav Ballaney wrote: > Hi, > I've added reference data and autopkgtests to bppsuite. All tests pass in a > clean chroot. Please review and sponsor. > https://salsa.debian.org/med-team/bppsuite > > Regard

Re: [RFS] vsearch

Hi Andreas On Sat, 13 Jun 2020, 03:24 Andreas Tille, wrote: > Uploaded. Thanks for your work on this, Andreas. > Due to the sheer size of examples, I've made a separate binary (Since vsearch-data doesn't seem to be in NEW/debian archive I've taken a part of this) - vsearch-examples. And hence,

Re: RFS: indelible

Uploaded. Thank you both! On 12.06.20 09:09, Fabian Klötzl wrote: Hi Pranav, Wow, you have quite the bash skills. I can't run things locally at the moment, but I think it looks fine. Fingers crossed, it works consistently across architectures. Can s.o. please sponsor an upload? Best, Fabian

Re: RFS: cluster3

I just saw Andreas is at it. On 12.06.20 07:11, Pranav Ballaney wrote: Hi, I've added reference data and autopkgtests to cluster3. All tests pass in a clean chroot. Please review and sponsor. https://salsa.debian.org/med-team/cluster3 Regards, Pranav

RFS: mapsembler2

Hi, I've added reference data and autopkgtests to mapsembler2. All tests pass in a clean chroot. Please review and sponsor. https://salsa.debian.org/med-team/mapsembler2 Regards, Pranav ᐧ

Re: RFS: indelible

Hi, Thanks, Fabian. I've only recently learnt - GSoC has been quite the learning experience! Thanks Steffen and Andreas for the uploads. Regards, Pranav On Sat, Jun 13, 2020 at 4:13 AM Steffen Möller wrote: > Uploaded. Thank you both! > > On 12.06.20 09:09, Fabian Klötzl wrote: > > Hi Pranav, >

Re: PhyML error - does that ring any bell? Re: RFS: python-biopython

On 2020-06-12 20:40, Steffen Möller wrote: > to suggest packaging https://github.com/rcsb/mmtf-python - sigh. Any > takers? Would be quite a fit for next week's hackathon, I presume. FYI, python3-mmtf has just been mentioned as required by Debichem team. A RFP bug has just been opened [1]. I am mi

Re: Bug#962675: can cdbfasta be marked Multi-Arch: foreign?

Hi Andreas, On Thu, Jun 11, 2020 at 10:45:13PM +0200, Andreas Tille wrote: > On Thu, Jun 11, 2020 at 06:26:47PM +0200, Helmut Grohne wrote: > > > > microbiomeutil fails to cross build from source, because it fails > > running cdbfasta with an "Exec format error". Usually, this indicates > > that

Re: Bug#962675: can cdbfasta be marked Multi-Arch: foreign?

Hi Helmut, On Sat, Jun 13, 2020 at 06:53:04AM +0200, Helmut Grohne wrote: > > Getting in touch with you and the Debian Med mailing list since the > > answer is not clear to me. > > So can you give some more background about the file formats involved? > > As far as I can see, those FASTA files ar