Re: RFS : libdistlib-java

2020-05-26 Thread Pierre Gruet
Hi Andreas, Le 25/05/2020 à 23:12, Andreas Tille a écrit : > Hi Pierre, > > On Mon, May 25, 2020 at 10:47:58PM +0200, Pierre Gruet wrote: >> I have packaged libdistlib-java, which is a Java implementation of >> several cdf, pdf, quantile and simulation functions from R, originally >> written in C

Bug#961619: ITP: libmath-cephes-perl -- perl interface to the math cephes library

2020-05-26 Thread Étienne Mollier
Package: wnpp Owner: Etienne Mollier Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org, debian-p...@lists.debian.org, debian-med@lists.debian.org * Package name: libmath-cephes-perl Version : 0.5305 Upstream Author : Shlomi Fish * URL : https://metacpan.

Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures

2020-05-26 Thread Étienne Mollier
Hi Andrius, mer...@debian.org, on 2020-05-20 06:24:47 +0300: > On 2020-05-19 23:01, Étienne Mollier wrote: > > For what it's worth, looking at the C code embeded into the Perl > > modules, this seems to be the result of a swig wrapping. I'm a > > bit unsure how the relinking is supposed to occur

Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas

2020-05-26 Thread Aaron M. Ucko
"Aaron M. Ucko" writes: > I didn't find as much time as I hoped, but I just pushed changes to > correct sra-sdk's accidental cutover to ncbi-vdb, and will follow up > with my tweaks to both packages when I get a chance. I think I finally have everything in order and on track to migrate, so pleas

Re: Statistics::PCA and friends

2020-05-26 Thread Étienne Mollier
Hi Gregor, gregor herrmann, on 2020-05-23 14:20:12 +0200: > Thanks for your changes; I just pulled, made one tiny change and > uploaded the package to NEW. and thank you for your upload. :) I believe the package for the Math::Cephes should be in good shape as well, if you, or someone else of th

Re: gbp related issues with importing new upstream release for raxml-ng

2020-05-26 Thread Andrius Merkys
Hi Shayan, On Tue, 26 May 2020, 19:42 Shayan Doust, wrote: > dpkg-source: info: you can integrate the local changes with dpkg-source > --commit > dpkg-source: error: aborting due to unexpected upstream changes, see > /tmp/raxml-ng_0.2.0-1.diff.8CFoS7 > dpkg-buildpackage: error: dpkg-source -b .

Re: gbp related issues with importing new upstream release for raxml-ng

2020-05-26 Thread Andrius Merkys
On Tue, 26 May 2020, 21:25 Andrius Merkys, wrote: > A quick guess: maybe topost entry of d/changelog has an version number? If > so, updating it should fix this. > I meant: an old version number. Andrius >

Re: gbp related issues with importing new upstream release for raxml-ng

2020-05-26 Thread Andrius Merkys
On Tue, 26 May 2020, 22:03 Shayan Doust, wrote: > That fixed it - thanks. That didn't come into mind because I was under > the impression that the version in the changelog didn't make such major > difference but the git tag itself. > I remember this took quite some time for me to figure it out m

Re: gbp related issues with importing new upstream release for raxml-ng

2020-05-26 Thread Andreas Tille
On Tue, May 26, 2020 at 10:14:11PM +0300, Andrius Merkys wrote: > > I remember this took quite some time for me to figure it out myself too :) gbp checks out the tarball from pristine-tar that matches the version number in d/changelog. If this does not fit the content of the files inside master

Re: Bug#961619: ITP: libmath-cephes-perl -- perl interface to the math cephes library

2020-05-26 Thread Andreas Tille
Hi Étienne, On Tue, May 26, 2020 at 07:10:49PM +0200, Étienne Mollier wrote: > ... > The package will be maintained under the umbrella of the Debian Perl Group. Thanks for packaging this. I guess sponsoring is no issue in Debian Perl Group - please let us know if this assumption is wrong. Kind

Re: gbp related issues with importing new upstream release for raxml-ng

2020-05-26 Thread Andreas Tille
On Tue, May 26, 2020 at 09:38:38PM +0200, Andreas Tille wrote: > On Tue, May 26, 2020 at 10:14:11PM +0300, Andrius Merkys wrote: > > > > I remember this took quite some time for me to figure it out myself too :) > > gbp checks out the tarball from pristine-tar that matches the version > number in

Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas

2020-05-26 Thread Andreas Tille
Hi Aaron, On Tue, May 26, 2020 at 01:41:41PM -0400, Aaron M. Ucko wrote: > I think I finally have everything in order and on track to migrate, so > please don't upload either ncbi-vdb or sra-sdk for non-urgent matters > until that happens. (In particular, please hold off for now on updating > sra

Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures

2020-05-26 Thread Andreas Tille
Hi Étienne, On Tue, May 26, 2020 at 07:41:48PM +0200, Étienne Mollier wrote: > > Swig wrappers could (and, in my understanding of Debian policies of > > rebuilding things from source, should) be regenerated from Cephes.i file. > > It makes sense. In that particular case though, after a bit of >

Re: Bug#961619: ITP: libmath-cephes-perl -- perl interface to the math cephes library

2020-05-26 Thread Étienne Mollier
Hi Andreas, Andreas Tille, on 2020-05-26 21:50:13 +0200: > On Tue, May 26, 2020 at 07:10:49PM +0200, Étienne Mollier wrote: > > ... > > The package will be maintained under the umbrella of the Debian Perl Group. > > Thanks for packaging this. I guess sponsoring is no issue in Debian Perl > Group

Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas

2020-05-26 Thread Steffen Möller
On 26.05.20 21:55, Andreas Tille wrote: Hi Aaron, On Tue, May 26, 2020 at 01:41:41PM -0400, Aaron M. Ucko wrote: I think I finally have everything in order and on track to migrate, so please don't upload either ncbi-vdb or sra-sdk for non-urgent matters until that happens. (In particular, pl

Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures

2020-05-26 Thread Étienne Mollier
Hi Andreas, Andreas Tille, on 2020-05-26 22:01:41 +0200: > If I were you I would formally commit your try and ask on debian-mentors > (may be adding some diff between the upstream version and the generated > one). In case it does not trigger some help I agree that for the moment > the upstream pr

Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures

2020-05-26 Thread merkys
Hi Étienne, On 2020-05-26 20:41, Étienne Mollier wrote: > It makes sense. In that particular case though, after a bit of > reading and quite some testing, the resulting Cephes.pm > regenerated by swig fails the build time testing. I don't > exclude this is caused by a mishandling of mine with sw