Re: VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section)

2020-05-08 Thread Étienne Mollier
Hi Everyone, Charles Plessy, on 2020-05-08 09:19:59 +0900: > > On Thu, May 07, 2020 at 11:24:00PM +0200, Étienne Mollier wrote: > > > > > > At some point, I wondered if it would be possible to get > > > RepeatMasker into "non-free", and having VirusSeeker into > > > "contrib" then, but I'm not su

Re: VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section)

2020-05-08 Thread Andreas Tille
On Fri, May 08, 2020 at 09:19:59AM +0900, Charles Plessy wrote: > > their license. Would you mind doing so? If yes, I would consider > > mentioning our COVID-19 sprint and that a free license would support > > us in our fight against the pandemic. > > Hi all, > > +1 in principle, but I note tha

Re: VirusSeeker: RepeatMasker missed in dependencies

2020-05-08 Thread Étienne Mollier
Andreas Tille, on 2020-05-08 10:02:22 +0200: > I kept on pinging (feel free to browse the archive) and we should really > do more work here. I repeatedly said now is the time for this and that > non-programmers could do some extremely valuable contribution to join > this effort. Hi Andreas, For

RFS paml - fixed #957659

2020-05-08 Thread Étienne Mollier
Good day, I fixed another Gcc-10 FTBFS, for the "paml" package this time, and took this opportunity to run routine-update. Manual pages are still missing though. Actually, I have no clue how are supposed to be used these programs, so it may be better if someone having little background in phylo

Re: VirusSeeker: RepeatMasker missed in dependencies

2020-05-08 Thread Andreas Tille
On Fri, May 08, 2020 at 10:50:45AM +0200, Étienne Mollier wrote: > > For what it's worth, failing to locate a genuine contact > address related to RepeatMasker, I sent a request through the > "Submit Feedback" form to review the licensing terms, in hope > this helps. Thanks a lot. As I tried to

Tandem Repeats Finder License Terms

2020-05-08 Thread Étienne Mollier
Greetings Mr. Gary Benson and Yözen Hernández, I'm in the process of giving a hand to the Debian Med Team with maintaining several applications for the Debian project. In the context of the Covid-19 pandemic, the need for easing access to applications related to the medical field, notably virolog

Re: SIMDe use in Debian's MMseqs2

2020-05-08 Thread Michael Crusoe
[replying on the debian-med list with permission. Please keep Martin and Milot CC'd as they do not subscribe] On Fri, May 8, 2020 at 7:36 PM Milot Mirdita wrote: > Hi Michael, > > I am a developer on the MMseqs2 team and I saw your tweet regarding the > AWS ARM64 machines earlier and checked on

Re: Tandem Repeats Finder License Terms

2020-05-08 Thread Andreas Tille
Hi Étienne, thanks a lot. I've added another link at https://wiki.debian.org/DebianMed/SoftwareLiberation named "COVID-19". IMHO it would help if others in the team would respond in the same line to support Étienne and make sure the authors will really consider freeing their code. Kind re

Re: Packaging libsis-jhdf5-java -- help needed

2020-05-08 Thread Andreas Tille
Hi Pierre, On Thu, May 07, 2020 at 11:28:32PM +0200, Pierre Gruet wrote: > I have just uploaded the new version 19.04.0+dfsg-2 of libsis-jhdf5-java > to Salsa: to close bug #959955, I have changed the name of the .so that > is generated to avoid name collisions. All tests from build-time and > aut

Re: Packaging libsis-jhdf5-java -- help needed

2020-05-08 Thread Pierre Gruet
Hi Andreas, Le 08/05/2020 à 22:05, Andreas Tille a écrit : > > Very nice. Thanks a lot for your work. I've built and installed the > package. When noticing that there is no manpage for h5ar I intended to > check whether it might be cheap to create one via help2man. However, > this ended up in

Re: Packaging libsis-jhdf5-java -- help needed

2020-05-08 Thread Andreas Tille
Hi Pierre, On Fri, May 08, 2020 at 10:24:47PM +0200, Pierre Gruet wrote: > > Absolutely. This is part of the complementary tasks I was planning to do > (my Salsa push of yesterday was only to fix the RC bug). h5ar was not in > the previous packaging of libsis-jhdf5-java. If you think you might b

Re: RFS: parsnp

2020-05-08 Thread Pranav Ballaney
Hi Andreas, On Thu, May 7, 2020 at 10:04 AM Andreas Tille wrote: > Hi Pranav, > > On Thu, May 07, 2020 at 06:12:03AM +0530, Pranav Ballaney wrote: > > I've added autopkgtests to parsnp, and also a missing dependency: > > harvest-tools. > > This also fixes an issue raised here: > > https://github