Re: [covid-19] Gradle help for nextflow needed

2020-04-30 Thread Andreas Tille
Hi Andrius and Benedict, thanks to you both for your answers! On Thu, Apr 30, 2020 at 06:01:45AM +0300, mer...@debian.org wrote: > > 8< > plugins { >     id "io.codearte.nexus-staging" version "0.21.2" > } > 8<--

Re: [covid-19] Gradle help for nextflow needed

2020-04-30 Thread Andreas Tille
On Thu, Apr 30, 2020 at 01:10:34PM +0200, Andreas Tille wrote: > For the moment I did this. I delay the hint for the gradle dependencies > given by Benedict in the other mail since for the moment I think I have > spotted a real dependency that needs to be packaged: > > A problem occurred evaluati

Re: Packaging libsis-jhdf5-java -- help needed

2020-04-30 Thread Pierre Gruet
Hi Gilles, Le 29/04/2020 à 17:53, Gilles Filippini a écrit : > Andreas Tille a écrit le 29/04/2020 à 17:36 : >> Hi Gilles, >> >> On Wed, Apr 29, 2020 at 05:10:38PM +0200, Gilles Filippini wrote: >>> >>> I've cloned the git repo and attempted a build. But the dh_auto_test >>> part doesn't execute a

Re: Packaging libsis-jhdf5-java -- help needed

2020-04-30 Thread Gilles Filippini
Pierre Gruet a écrit le 30/04/2020 à 17:40 : > Hi Gilles, > > Le 29/04/2020 à 17:53, Gilles Filippini a écrit : >> Andreas Tille a écrit le 29/04/2020 à 17:36 : >>> Hi Gilles, >>> >>> On Wed, Apr 29, 2020 at 05:10:38PM +0200, Gilles Filippini wrote: I've cloned the git repo and attempted

Videoconference on Friday 2020-05-01 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)))

2020-04-30 Thread Andreas Tille
Hi, for those who would like to join ur next videomeeting it will happen at https://www.timeanddate.com/worldclock/fixedtime.html?msg=Debian+CoViD-19+Biohackathon+Video+Conference&iso=20200501T20&p1=37&ah=1 in the Jitsi channel https://meet.jit.si/DebianMedCovid19 See you Andrea

Re: Packaging libsis-jhdf5-java -- help needed

2020-04-30 Thread Gilles Filippini
Gilles Filippini a écrit le 30/04/2020 à 19:45 : > Pierre Gruet a écrit le 30/04/2020 à 17:40 : >> Hi Gilles, >> >> Le 29/04/2020 à 17:53, Gilles Filippini a écrit : >>> Andreas Tille a écrit le 29/04/2020 à 17:36 : Hi Gilles, On Wed, Apr 29, 2020 at 05:10:38PM +0200, Gilles Filippin

Re: Packaging libsis-jhdf5-java -- help needed

2020-04-30 Thread Pierre Gruet
Hello Gilles, Le 30/04/2020 à 23:17, Gilles Filippini a écrit : >>> >>> Thanks for checking; I had also seen that these tests did not run, this will >>> have to be fixed. More important is the fact that I have put and arranged >>> the piece of code of dh_auto_test override into a test in >>> debia

Re: Packaging libsis-jhdf5-java -- help needed

2020-04-30 Thread Gilles Filippini
Pierre Gruet a écrit le 30/04/2020 à 23:45 : > Thanks for looking at the issue and proposing a fix. It is very helpful! > I will thus look at it and investigate further the failures that remain. This package looks weird. Where does the mix-up between libhdf5-java and libsis-jhdf5-java come from? T

Re: [covid-19] Gradle help for nextflow needed

2020-04-30 Thread merkys
Hi Andreas, On 2020-04-30 15:27, Andreas Tille wrote: > I wonder whether this fits into Debian packaging policy at all and > whether I need to avoid this in favour of packaging proper JARs? I believe it is the latter. Capsules seem to embed all their dependencies, and this is something to avoid.

Re: Packaging libsis-jhdf5-java -- help needed

2020-04-30 Thread Pierre Gruet
Hi Gilles, Le 01/05/2020 à 01:12, Gilles Filippini a écrit : > Pierre Gruet a écrit le 30/04/2020 à 23:45 : >> Thanks for looking at the issue and proposing a fix. It is very helpful! >> I will thus look at it and investigate further the failures that remain. > > This package looks weird. Where d