biojava-live

2018-11-12 Thread Olivier Sallou
Hi Andreas, I see you added some commits to set biojava to v8 to fix the corba issue. However you did not upload the package yet. As it is set to autoremoval due to this bug, is there any reason you did not upload new package? Olivier -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key

igv updated to close 895765

2018-11-12 Thread Olivier Sallou
Hi, I updated igv to fix openjdk 11 build issue. Compil is ok with jdk 11 and exec looks ok. I have not uploaded it in case some issues were still pending Olivier -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Status of rsat?

2018-11-12 Thread Michael Crusoe
Hello from the EU Biohackathon http://bh2018paris.info/ The rsat team is here, working on packaging for bioconda. I found https://salsa.debian.org/med-team/rsat/ and I was wondering what blockers that might be to finishing this. Their chat room for the event is at https://gitter.im/bh2018paris/06

Re: Status of rsat?

2018-11-12 Thread Andreas Tille
On Mon, Nov 12, 2018 at 05:48:16PM +0100, Michael Crusoe wrote: > Hello from the EU Biohackathon http://bh2018paris.info/ > > The rsat team is here, working on packaging for bioconda. I found > https://salsa.debian.org/med-team/rsat/ and I was wondering what blockers > that might be to finishing t

Re: Status of rsat?

2018-11-12 Thread Jacques van Helden
Dear Andreas Uncredible to get an answer so fast, just a few hours after Michael Crusoe resurrected the embryo of our RSAT Debian packaging project. In the mean time a collaborator in Marseille studied the feasibility of Debian packaging but her conclusions were that it would probably involve

cromwell

2018-11-12 Thread Diane Trout
Hi, I've been asked to start trying to use cromwell https://software.broadinstitute.org/wdl/ Debian doesn't have packaging for it yet, it looks like its BSD licensed with an extra "no endorsement clause" https://github.com/broadinstitute/cromwell/blob/develop/LICENSE.txt * Neither the name Broa