picard-tools updated, and ready?

2018-05-04 Thread Olivier Sallou
I have updated git repo for picard-tools. Dependencies are in java team (gkl, gatk-native-bindings, barclay) but not uploaded yet. Instead I uploaded them to experimental for the moment, waiting for full validation with picard-tools. I disabled unit tests due to a testng issue (I created a bug fo

Re: picard-tools updated, and ready?

2018-05-04 Thread Andreas Tille
Hi Olivier, On Fri, May 04, 2018 at 09:22:11AM +0200, Olivier Sallou wrote: > I have updated git repo for picard-tools. > > Dependencies are in java team (gkl, gatk-native-bindings, barclay) but > not uploaded yet. Instead I uploaded them to experimental for the > moment, waiting for full validat

Re: Sponsored upload : odil 0.9.2-1

2018-05-04 Thread Andreas Tille
Hi Julien, On Thu, May 03, 2018 at 05:17:05PM +0200, Julien Lamy wrote: > I've updated the Git repository of Odil to the latest upstream version > (0.9.2). The packages build correctly on sid, and lintian shows neither > warning nor errors. I think this new version could also solve the build > pro

Re: Fwd: New bali-phy version

2018-05-04 Thread Andreas Tille
Hi Benjamin, On Thu, May 03, 2018 at 05:24:11PM -0400, Benjamin Redelings wrote: >     I've updated the bali-phy repo on salsa for a new version (3.1).  I > added a single patch; I'll fix this upstream before the next version. > >     I don't think I can upload, so if that's right, can you check

Re: Qlustar 10 available - Now 100% Open Source

2018-05-04 Thread Roland Fehrenbacher
> "A" == Andreas Tille writes: Hi Andreas, Tony, A> Hi Tony, On Sat, Apr 21, 2018 at 04:57:41PM +0200, Tony Travis A> wrote: >> Q-Leap previously offered to support Debian-Med and they attended >> at least one Debian-Med Sprint. However, their product licensing >> policy

Re: picard-tools updated, and ready?

2018-05-04 Thread Olivier Sallou
On 05/04/2018 02:30 PM, Andreas Tille wrote: > Hi Olivier, > > On Fri, May 04, 2018 at 09:22:11AM +0200, Olivier Sallou wrote: >> I have updated git repo for picard-tools. >> >> Dependencies are in java team (gkl, gatk-native-bindings, barclay) but >> not uploaded yet. Instead I uploaded them to

Re: picard-tools updated, and ready?

2018-05-04 Thread Andreas Tille
On Fri, May 04, 2018 at 04:03:48PM +0200, Olivier Sallou wrote: > > > >> I tested it with htsjdk from experimental. > > I guess there is no other chance since it depends from the version > > there, right? > > I can't upload to unstable as one of the deps (gkl) depends on htsjdk , > and need a *rec