Re: fasttree: hard-coded limit on branch length precision leads to erroneous results

2015-03-27 Thread Andreas Tille
Hi Charles, On Fri, Mar 27, 2015 at 08:55:14AM +0900, Charles Plessy wrote: > > I'll tag #781259 as serious. > > Hi Roland, > > to get the fix in Jessie at this point of the Freeze, it has to be limited the > strict necessary changes. > > I recommend to temporarly revert the following commits:

Re: fasttree: hard-coded limit on branch length precision leads to erroneous results

2015-03-27 Thread Roland Fehrenbacher
> "C" == Charles Plessy writes: Hi Charles, C> Le Thu, Mar 26, 2015 at 05:15:36PM +0100, Andreas Tille a écrit : >> On Thu, Mar 26, 2015 at 05:14:24PM +0100, Andreas Tille wrote: >> > > The above article describes the patch needed to prevent the >> > > flaw. Upstream incorpor

Re: [MoM] dwv

2015-03-27 Thread Andreas Tille
Hi Yves, ping, I neither noticed any activity nor any question of yours. Please let us know if the hints below are not helpful enough. Kind regards Andreas. On Wed, Mar 18, 2015 at 11:05:37AM +0100, Andreas Tille wrote: > Hi Yves, > > On Tue, Mar 17, 2015 at 10:08:18PM +0100, Yves wro

Re: [MoM] dwv

2015-03-27 Thread Yves
Ping received! I got stuck in other stuff but should have some time this week end... About the empty package, how do I "install your real install target into the package"? On 27 March 2015 at 12:44, Andreas Tille wrote: > Hi Yves, > > ping, I neither noticed any activity nor any question of you

gatk: Any hint for Java (Maven) packaging

2015-03-27 Thread Andreas Tille
Hi, I just commited Vcs-Git: git://anonscm.debian.org/debian-med/gatk.git I had no real luck with mh_make which only created debian/maven.* files but no d/contol and d/rules file due to some error in the last step. I also noticed the following output from mh_make process: In pom.xml: This d

Re: [MoM] dwv

2015-03-27 Thread Andreas Tille
Hi Yves, On Fri, Mar 27, 2015 at 12:52:23PM +0100, Yves wrote: > About the empty package, how do I "install your real install target into > the package"? Usually dh_auto_install calls the install target of the provided upstream build system. This obviously does nothing since the package remains

Re: fasttree: hard-coded limit on branch length precision leads to erroneous results

2015-03-27 Thread Andreas Tille
Hi Roland, On Fri, Mar 27, 2015 at 11:01:29AM +0100, Roland Fehrenbacher wrote: > C> commit 5788cecbb05a4394c3fed722c47bdba5c20432ef Author: > C> tbooth-guest Date: Tue Feb 25 13:43:34 > C> 2014 + > > C> Fixed package not cleaning 100% after build. > > this is a perf

Re: fasttree: hard-coded limit on branch length precision leads to erroneous results

2015-03-27 Thread Charles Plessy
Le Fri, Mar 27, 2015 at 02:10:38PM +0100, Andreas Tille a écrit : > On Fri, Mar 27, 2015 at 11:01:29AM +0100, Roland Fehrenbacher wrote: > > > C> Do you think it would be possible to backport the change for > > C> Wheezy as well ? > > > > I guess so. We have already built the package for

Re: Intent to package seg3d-- need mentoring/advice?

2015-03-27 Thread Andreas Tille
Hi Robert, thanks for your interest in Debian Med. On Thu, Mar 26, 2015 at 05:02:58PM -0400, Robert Blake wrote: > To whom it may concern: > > I would like to package seg3d > (http://www.sci.utah.edu/cibc-software/seg3d.html) for the > debian-med PPA and eventually debian unstable. I'd consider

fw4spl's bug reported

2015-03-27 Thread Corentin Desfarges
Hi everybody I have just been notified of two "Release Critical Bug" concerning fw4spl. As it is the first time that one of my packages is concerned by a report, I would like some clarifications before to do something wrong, About the first bug [1], I presume that it comes from this line of my Fi

Re: fw4spl's bug reported

2015-03-27 Thread Andreas Tille
Hi Corentin, On Fri, Mar 27, 2015 at 04:02:02PM +0100, Corentin Desfarges wrote: > I have just been notified of two "Release Critical Bug" concerning fw4spl. > As it is the first time that one of my packages is concerned by a report, I > would like some clarifications before to do something wrong,

Re: [MoM] dwv

2015-03-27 Thread Yves
Ok, I can create this install file. The source will be where ever the built shared library is and the target is the plugin folder of orthanc. Or do you mean something else by 'source'? And a newbie question, how do I switch to using sid packages for my test builds? On 27 March 2015 at 13:57, Andr

Re: [MoM] dwv

2015-03-27 Thread Andreas Tille
On Sat, Mar 28, 2015 at 12:29:27AM +0100, Yves wrote: > Ok, I can create this install file. The source will be where ever the built > shared library is and the target is the plugin folder of orthanc. Yes. > And a newbie question, how do I switch to using sid packages for my test > builds? Seek f