Re: [MoM] incorporating phyutility into the packages

2014-03-25 Thread Andreas Tille
Hi Stephen, On Mon, Mar 24, 2014 at 10:09:45PM -0400, Stephen Smith wrote: > I believe I have solved these issues and expanded the content to a more > meaningful manpage. I think the synopsis was close but made some edits > and the same for the description. I added some examples and more info > fo

RM: bowtie2 [i386 hurd-i386 kfreebsd-i386] -- ANAIS; new release does not build on architectures other than amd64

2014-03-25 Thread Alex Mestiashvili
X-Debbugs-Cc: a...@biotec.tu-dresden.de Package: ftp.debian.org Severity: normal Dear FTP Masters, New upstream release of bowtie2 doesn't build on mentioned in the subject architectures. In order to force transition from unstable to testing could you please consider removal of packages in te

Re: Please consider relicensing maxflow 3.0 as free software

2014-03-25 Thread Vladimir Kolmogorov
Dear Gert, I have put it under GPL (see version 3.03 on my homepage). Regards, Vladimir. On 03/17/2014 04:03 PM, Gert Wollny wrote: Dear Prof. Kolmogorov, dear Prof. Boykov, I'm writing to you on behalf of the Debian Med team. Debian Med is a collaborative effort to include all Free Software

Re: Please consider relicensing maxflow 3.0 as free software

2014-03-25 Thread Andreas Tille
Dear Vladimir, that's a very cool and quick move. Many thanks for this Andreas. On Tue, Mar 25, 2014 at 02:37:50PM +0100, Vladimir Kolmogorov wrote: > Dear Gert, > > I have put it under GPL (see version 3.03 on my homepage). > > Regards, > Vladimir. > > On 03/17/2014 04:03 PM, Gert Wol

RM: bowtie2 [i386 hurd-i386 kfreebsd-i386] -- ANAIS; new release does not build on architectures other than amd64

2014-03-25 Thread Alex Mestiashvili
Package: ftp.debian.org Severity: normal Dear FTP Masters, New upstream release of bowtie2 doesn't build on mentioned in the subject architectures. In order to force transition from unstable to testing could you please consider removal of packages in testing with non amd64 architectures ? Also

Re: Please consider relicensing maxflow 3.0 as free software

2014-03-25 Thread Gert Wollny
Dear Vladimir, thanks a lot, we really appreciate this. Now that packaging can go forward. Best regards, Gert Wollny On 03/25/14 14:37, Vladimir Kolmogorov wrote: Dear Gert, I have put it under GPL (see version 3.03 on my homepage). Regards, Vladimir. On 03/17/2014 04:03 PM, Gert Wollny wr

ITP: maxflow - a library implementing a minimum cut/maximum flow algorithm

2014-03-25 Thread Gert Wollny
Package: wnpp Severity: wishlist * Package name: maxflow Version : 3.03 Upstream Author : Vladimir Kolmogorov and Yuri Boykov * URL : http://pub.ist.ac.at/~vnk/software.html * License : GPL3+ Programming Lang: C++ Description : This library implements the ma

Re: [MoM] incorporating phyutility into the packages

2014-03-25 Thread Stephen Smith
Hi Andreas, > If you would have called `lintian -I -i` it would have told you that > there were some minus signes inside the manpage where hyphens are > expected. Since I was fixing syntactical issues before I did so for now > as well. Just a recommendation to use lintian extensively the next > t

Re: [MoM] incorporating phyutility into the packages

2014-03-25 Thread Andreas Tille
Hi Stephen, On Tue, Mar 25, 2014 at 01:22:19PM -0400, Stephen Smith wrote: > > If you would have called `lintian -I -i` it would have told you that > > there were some minus signes inside the manpage where hyphens are > > expected. Since I was fixing syntactical issues before I did so for now > >

Re: [MoM] incorporating phyutility into the packages

2014-03-25 Thread Stephen Smith
In that case, I might like to try some other packages. Might try this one (treePL divergence time analysis for phylogenies) published here http://www.ncbi.nlm.nih.gov/pubmed/22908216 but will think about it. Also, I see there is a list of packages for debian as a whole that need help, but is there

Re: [tryton] Re: [Health-dev] Exception when building the package in a cleanroom Debian environment

2014-03-25 Thread Mathias Behrle
* Luis Falcon: " [tryton] Re: [Health-dev] Exception when building the package in a cleanroom Debian environment" (Mon, 24 Mar 2014 19:02:30 -0300): Hi Emilien, hi all, > On Mon, 24 Mar 2014 21:35:40 +0100 > Emilien Klein wrote: > > > Hi GNU Health team, > > > > The Debian package has to pas

Re: [MoM] incorporating phyutility into the packages

2014-03-25 Thread Andreas Tille
Hi Stephen On Tue, Mar 25, 2014 at 01:44:52PM -0400, Stephen Smith wrote: > In that case, I might like to try some other packages. Might try this > one (treePL divergence time analysis for phylogenies) published here > http://www.ncbi.nlm.nih.gov/pubmed/22908216 > but will think about it. That's